About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12051MELANOCYTE PROTEIN PMEL 17-RELATED
HS12052PENTRAXIN
HS12053DNA POLYMERASE TYPE-X FAMILY MEMBER
HS12054ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
HS12055ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS12056DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
HS12057FORKHEAD BOX PROTEIN
HS12058VHS DOMAIN CONTAINING PROTEIN FAMILY
HS12059ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR
HS12060VACUOLAR IMPORT AND DEGRADATION PROTEIN 24
HS12061SH3 MULTIPLE DOMAIN
HS12062
HS12063METHIONINE-R-SULFOXIDE REDUCTASE B1
HS12064TEX2 PROTEIN-RELATED
HS12065NEURALIZED
HS12066HEPARAN SULFATE SULFOTRANSFERASE
HS12067UNCHARACTERIZED
HS12068G BETA-LIKE PROTEIN GBL
HS12069GASTROKINE 1
HS120704-NITROPHENYLPHOSPHATASE-RELATED
HS12071ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
HS12072FORMIN HOMOLOGY 2 FAMILY MEMBER
HS120733BP-1 RELATED RHOGAP
HS12074LEUCINE CARBOXYL METHYLTRANSFERASE
HS12075AQUAPORIN TRANSPORTER
HS12076HEMOGLOBIN FAMILY MEMBER
HS12077HEMOGLOBIN FAMILY MEMBER
HS12078INACTIVE RHOMBOID PROTEIN
HS12079UBA-LIKE DOMAIN-CONTAINING PROTEIN 2
HS12080FORKHEAD BOX PROTEIN J1
HS12081MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED
HS12082DNA REPAIR ENDONUCLEASE XPF
HS12083MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED
HS12084PROTEIN SHISA-9-RELATED
HS12085DESUMOYLATING ISOPEPTIDASE
HS12086KU AUTOANTIGEN DNA HELICASE
HS12087GTPASE, IMAP FAMILY MEMBER-RELATED
HS12088JOSEPHIN 1, 2
HS12089TRINUCLEOTIDE REPEAT-CONTAINING GENE 6
HS12090TRINUCLEOTIDE REPEAT-CONTAINING GENE 6
HS12091TRINUCLEOTIDE REPEAT-CONTAINING GENE 6
HS12092ORGANIC SOLUTE TRANSPORTER-RELATED
HS12093
HS12094TRANSCRIPTION FACTOR MAF
HS12095MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM22
HS12096RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER
HS12097TRANSLATION FACTOR
HS12098
HS12099SI:CH211-232M10.4-RELATED
HS12100SORTING NEXIN-29-RELATED
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