About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11801KELCH DOMAIN-CONTAINING PROTEIN
HS11802LASP
HS11803TUMOR ENDOTHELIAL MARKER 7 RELATED
HS11804DICKKOPF3-LIKE 3
HS11805ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS11806GUANYLYL CYCLASE
HS11807LONG-CHAIN-FATTY-ACID--COA LIGASE
HS11808ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
HS11809PR DOMAIN ZINC FINGER PROTEIN
HS11810GLUCOSE-6-PHOSPHATASE
HS11811GLUCOSE-6-PHOSPHATASE
HS11812PROTEASOME REGULATOR PA28
HS11813OVARIAN CARCINOMA ANTIGEN CA125-RELATED
HS11814TRANSMEMBRANE PROTEIN 106B
HS11815ADP RIBOSYLATION FACTOR-RELATED
HS11816AGAP008228-PA
HS11817SCLEROSTIN-RELATED
HS11818HOMEOBOX PROTEIN MOX
HS11819ETS
HS11820ATP-DEPENDENT RNA HELICASE
HS11821ATP-DEPENDENT RNA HELICASE
HS11822NUCLEAR HORMONE RECEPTOR
HS11823WNT RELATED
HS11824ORMDL PROTEINS
HS11825VESICULAR-FUSION PROTEIN NSF
HS1182626S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2
HS11827CYCLIN DEPENDANT KINASE-5 ACTIVATOR
HS11828MYOSIN
HS11829PYRUVATE DEHYDROGENASE KINASE
HS11830PROSAPIP2 PROTEIN/5-AZACYTIDINE INDUCED GENE 2
HS11831T-BOX PROTEIN-RELATED
HS11832OXYSTEROL-BINDING PROTEIN-RELATED
HS1183339S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL
HS11834PYRIDOXINE-5-PHOSPHATE OXIDASE
HS11835-
HS11836CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3
HS11837NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR
HS11838
HS11839CHROMOBOX PROTEIN
HS11840SI:DKEY-9I5.2-RELATED
HS11841
HS11842PX DOMAIN-CONTAINING PROTEIN
HS11843SRC-ASSOCIATED ADAPTOR PROTEIN
HS11844HOMEOBOX PROTEIN ROUGH-RELATED
HS11845PROTEIN ZERKNUELLT 1-RELATED
HS11846
HS11847HOMEOBOX PROTEIN HOX
HS11848TUBULIN POLYGLUTAMYLASE
HS11849SKICH DOMAIN-CONTAINING PROTEIN
HS11850EAP30 SUBUNIT OF ELL COMPLEX
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