About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11551HEART DEVELOPMENT PROTEIN WITH EGF-LIKE DOMAINS 1
HS11552KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS11553INWARD RECTIFIER POTASSIUM CHANNEL
HS11554VILLIN
HS11555N-MYRISTOYL TRANSFERASE
HS11556LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
HS11557DESMOGLEIN FAMILY MEMBER
HS11558
HS11559PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
HS11560ACYL-MALONYL CONDENSING ENZYME-RELATED
HS11561LEUCINE-RICH REPEAT-CONTAINING PROTEIN
HS11562
HS11563RETINOL-BINDING PROTEIN 4
HS11564CENTROSOMAL PROTEIN OF 55 KDA
HS11565HEREGULIN-NEUREGULIN FAMILY MEMBER
HS11566GDNF RECEPTOR ALPHA
HS11567LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1
HS11568ACTIN FILAMENT-ASSOCIATED PROTEIN 1 FAMILY MEMBER
HS11569KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
HS11570COLLAGEN ALPHA
HS11571TUDOR DOMAIN CONTAINING PROTEIN
HS11572CTCL TUMOR ANTIGEN HD-CL-01
HS11573ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS11574NHL REPEAT-CONTAINING PROTEIN 2
HS11575PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY S MEMBER 1
HS11576DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED
HS11577CASPASE
HS11578NEBULIN
HS11579TRYPSIN-RELATED
HS11580NUCLEAR FUSION PROTEIN FUS2
HS11581PROTEASE M14 CARBOXYPEPTIDASE
HS11582INTEGRIN BETA SUBUNIT
HS11583
HS11584RHO FAMILY GTPASE
HS11585SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE
HS11586PHOSPHATASE, ORPHAN 1, 2
HS11587CONNEXIN
HS11588ACTIVATOR OF S-PHASE KINASE-RELATED
HS11589ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
HS11590PROTEIN LYSINE HYDROXYLATION COMPLEX COMPONENT
HS11591PEPTIDYLPROLYL ISOMERASE
HS11592KELCH PROTEIN
HS11593ATP-CITRATE SYNTHASE
HS11594DNAJ HOMOLOG SUBFAMILY C MEMBER 7
HS11595DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN
HS11596-
HS11597VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
HS1159860S RIBOSOMAL PROTEIN L19
HS11599GH3 DOMAIN-CONTAINING PROTEIN
HS11600
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