About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11251ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS11252AGAP004733-PA
HS11253REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11254BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS11255SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
HS1125660S RIBOSOMAL PROTEIN L7
HS11257SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS11258ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS11259REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11260
HS11261CORNICHON-RELATED
HS11262HISTONE DEACETYLASE HDAC1-RELATED
HS11263LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
HS11264ATP-DEPENDENT RNA HELICASE DBP3
HS11265PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
HS11266SULFATE TRANSPORTER
HS11267TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 21
HS11268ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS11269SH3 DOMAIN-CONTAINING
HS11270ADHESION G-PROTEIN COUPLED RECEPTOR
HS11271APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
HS11272DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS11273LP10445P
HS11274UNCHARACTERIZED
HS11275BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
HS11276CHONDROLECTIN VARIANT CHODLFDELTAE.
HS11277CHONDROLECTIN VARIANT CHODLFDELTAE.
HS11278RWD DOMAIN-CONTAINING PROTEIN 3
HS11279
HS11280PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
HS11281REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11282POL PROTEIN
HS11283HLA CLASS II GAMMA CHAIN
HS11284TOLL-LIKE RECEPTOR
HS11285PROTEIN DISPATCHED-RELATED
HS11286
HS11287HOMEODOX-CONTAINING PROTEIN 1 HMBOX1
HS11288STAR-RELATED LIPID TRANSFER PROTEIN 9
HS11289HISTONE ACETYLTRANSFERASE-RELATED
HS11290EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
HS11291PROENKEPHALIN
HS11292PAPILLOMAVIRUS REGULATORY FACTOR PRF-1
HS11293DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
HS11294STATHMIN
HS11295EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
HS11296ANKYRIN REPEAT AND EF-HAND DOMAIN-CONTAINING PROTEIN 1
HS11297
HS11298
HS11299SYNAPTOSOMAL ASSOCIATED PROTEIN
HS11300
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