About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11151LP21163P
HS11152NETRIN/LAMININ-RELATED
HS11153AMINO ACID TRANSPORTER
HS11154SUSHI DOMAIN-CONTAINING PROTEIN 1
HS11155DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN
HS11156CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS11157PROTEIN C10
HS11158UNCHARACTERIZED
HS11159UNCHARACTERIZED
HS111603'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1
HS11161MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
HS11162TRANSMEMBRANE PROTEIN 214
HS11163LD33804P
HS11164
HS11165DUF814-RELATED
HS11166N-ACETYLTRANSFERASE ECO
HS11167MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20-RELATED
HS11168SRCR DOMAIN-CONTAINING PROTEIN
HS11169STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 10
HS11170ACETYLGLUCOSAMINYLTRANSFERASE
HS11171GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
HS11172UNCHARACTERIZED
HS11173E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
HS11174EXOCYST COMPLEX COMPONENT 8
HS11175UNCHARACTERIZED
HS11176LEUCINE REPEAT ADAPTER PROTEIN 25
HS11177
HS11178ARV1
HS11179TETRATRICOPEPTIDE REPEAT PROTEIN 13
HS11180
HS11181
HS11182LITHOSTATHINE
HS11183SIMILAR TO RIKEN CDNA 2310022B05
HS11184CONNEXIN
HS11185CONNEXIN
HS11186CONNEXIN
HS11187INACTIVE HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 1
HS11188UPF0183 PROTEIN
HS11189MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED
HS11190DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
HS11191
HS11192PROTEIN TAG-278-RELATED
HS11193PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED
HS11194NUCLEAR RECEPTOR COACTIVATOR
HS11195UNC-93 RELATED
HS11196AFADIN
HS11197
HS11198
HS11199TUDOR DOMAIN CONTAINING PROTEIN
HS11200RFX TRANSCRIPTION FACTOR FAMILY
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