About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11201TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN
HS11202PLASMINOGEN-RELATED
HS11203SOLUTE CARRIER FAMILY 22 MEMBER
HS11204REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11205REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11206MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER
HS11207DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS11208UNCHARACTERIZED
HS11209DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS11210DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS11211HYDROXYCARBOXYLIC ACID RECEPTOR 2
HS11212HYDROXYCARBOXYLIC ACID RECEPTOR 2
HS11213MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE
HS11214IFT140/172-RELATED
HS11215CARBAMOYLTRANSFERASE FAMILY MEMBER
HS11216DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG
HS11217
HS11218E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
HS11219PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
HS11220CORTICOLIBERIN/UROCORTIN
HS112215'-NUCLEOTIDASE DOMAIN-CONTAINING
HS11222EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
HS11223-
HS11224UPF0240 PROTEIN
HS11225G-PROTEIN COUPLED RECEPTOR
HS11226MIDASIN-RELATED
HS11227CASPASE 8 ASSOCIATED PROTEIN 2
HS11228AGAP004733-PA
HS11229MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7
HS11230EPM2A-INTERACTING PROTEIN 1
HS11231EPH RECEPTOR A5
HS11232E3 UFM1-PROTEIN LIGASE 1
HS11233LYR MOTIF-CONTAINING PROTEIN 2
HS11234TYROSINE-PROTEIN KINASE
HS11235HEPARAN SULFATE SULFOTRANSFERASE
HS11236MYRISTOYLATED ALANINE-RICH C-KINASE SUBSTRATE MARCKS
HS11237BETA/GAMMA CRYSTALLIN
HS11238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11239REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11240PIKACHURIN-LIKE PROTEIN
HS11241TUBULIN
HS11242CONNECTIVE TISSUE GROWTH FACTOR-RELATED
HS11243SOLUTE CARRIER FAMILY 22 MEMBER
HS11244TYROSINE-PROTEIN KINASE
HS11245ADAPTER PROTEIN CIKS
HS11246G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
HS11247DNA POLYMERASE ZETA CATALYTIC SUBUNIT
HS11248G PROTEIN-COUPLED RECEPTOR
HS11249FORMIN HOMOLOGY 2 FAMILY MEMBER
HS11250MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7
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