About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11051LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN
HS11052SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B
HS11053
HS11054T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED
HS11055FLAGELLAR RADIAL SPOKE PROTEIN 3
HS11056MERLIN/MOESIN/EZRIN/RADIXIN
HS11057BITESIZE, ISOFORM I
HS11058ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
HS11059POTASSIUM CHANNEL, SUBFAMILY K
HS11060UNCHARACTERIZED
HS11061H2.0-LIKE HOMEOBOX PROTEIN
HS11062DUAL SPECIFICITY PROTEIN PHOSPHATASE
HS11063TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A
HS11064MELANOMA INHIBITORY ACTIVITY-RELATED
HS11065AXIN INTERACTOR, DORSALIZATION-ASSOCIATED PROTEIN
HS11066E3 UBIQUITIN-PROTEIN LIGASE RNF8
HS11067YNEIN REGULATORY COMPLEX SUBUNIT 5
HS11068TRANSMEMBRANE PROTEIN 151 HOMOLOG
HS11069NF-KAPPA-B INHIBITOR ALPHA
HS11070SOLUTE CARRIER FAMILY 35 MEMBER B
HS11071HEAT SHOCK PROTEIN 90 FAMILY MEMBER
HS11072RBM25 PROTEIN
HS11073
HS11074EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1
HS11075V-TYPE ATP SYNTHASE SUBUNIT D
HS11076MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
HS11077MOLYBDOPTERIN BIOSYNTHESIS PROTEIN
HS11078ALPHA- 1,6 -FUCOSYLTRANSFERASE
HS11079REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11080-
HS11081NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 1
HS11082SODIUM/POTASSIUM/CALCIUM EXCHANGER
HS11083CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2
HS11084MINA53 MYC INDUCED NUCLEAR ANTIGEN
HS11085ACETYLGLUCOSAMINYLTRANSFERASE
HS11086SYNAPTOTAGMIN 14, ISOFORM D
HS11087CYTOSOLIC 5'-NUCLEOTIDASE 1 FAMILY MEMBER
HS11088TIGHT JUNCTION-ASSOCIATED PROTEIN 1
HS11089PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
HS11090CYTOKINE RECEPTOR
HS11091MRNA-CAPPING ENZYME
HS11092
HS11093G-PROTEIN COUPLED RECEPTOR
HS11094UNCHARACTERIZED
HS11095ARGINYL-TRNA SYNTHETASE
HS11096NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
HS11097PROTEIN YIPPEE-LIKE CG15309-RELATED
HS11098PHOSPHOLIPASE B, PLB1
HS11099SERINE/THREONINE PROTEIN PHOSPHATASE
HS11100SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
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