About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10851C21ORF13-RELATED
HS10852PROTEIN FAM167A
HS10853CEREBRAL CAVERNOUS MALFORMATIONS PROTEIN 2 HOMOLOG
HS10854XK-RELATED PROTEIN
HS10855MYOTUBULARIN-RELATED
HS10856L-THREONINE 3-DEHYDROGENASE
HS10857G PATCH DOMAIN CONTAINING PROTEIN
HS10858SOX TRANSCRIPTION FACTOR
HS10859TYROSINE-PROTEIN KINASE
HS10860FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN
HS10861PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
HS10862RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
HS10863ZINC FINGER AND BTB DOMAIN-CONTAINING
HS10864SORTING NEXIN 17 AND 27
HS10865ALL-TRANS RETINOIC ACID-INDUCED DIFFERENTIATION FACTOR
HS10866TRANSLATION INITIATION FACTOR EIF-2B
HS10867NUCLEOSIDE DIPHOSPHATE KINASE 6
HS10868BRAIN AND ACUTE LEUKEMIA CYTOPLASMIC PROTEIN
HS10869
HS10870NEUROTRANSMITTER GATED ION CHANNEL
HS10871FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
HS10872BCL-2-MODIFYING FACTOR
HS10873ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14
HS10874FOS TRANSCRIPTION FACTOR-RELATED
HS10875MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED
HS10876TGF-BETA FAMILY
HS10877KNIRPS-RELATED PROTEIN-RELATED
HS10878YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP
HS10879HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26
HS10880DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED
HS10881FOS TRANSCRIPTION FACTOR-RELATED
HS10882FOS TRANSCRIPTION FACTOR-RELATED
HS10883FOS TRANSCRIPTION FACTOR-RELATED
HS10884TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
HS10885TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA
HS10886UNCHARACTERIZED
HS10887VISUAL SYSTEM HOMEOBOX 2
HS10888ACETYL-COENZYME A SYNTHETASE
HS10889ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
HS10890SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE
HS10891VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
HS10892TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE
HS10893FORMIN HOMOLOGY 2 FAMILY MEMBER
HS10894APOPTOSIS-STIMULATING OF P53 PROTEIN
HS10895APRATAXIN-RELATED
HS10896APRATAXIN-RELATED
HS10897NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
HS10898TRANSCRIPTION FACTOR GATA FAMILY MEMBER
HS10899FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE
HS10900CYSTEINE PROTEASE FAMILY C1-RELATED
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