About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10551
HS10552TYROSINE-PROTEIN PHOSPHATASE
HS10553SPERMATOGENESIS-ASSOCIATED PROTEIN 7
HS10554YALI0A06105P
HS10555PATCHED-RELATED
HS10556PROTEIN CBG26694
HS10557MYOTONIC DYSTROPHY S/T KINASE-RELATED
HS10558
HS10559
HS10560REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS10561DEFECTIVE SPERMATOGENESIS PROTEIN 39
HS10562TRANSCRIPTION INITIATION FACTOR IIB-RELATED
HS10563SI:DKEY-19B23.11-RELATED
HS10564DNA REPAIR PROTEIN XRCC3
HS10565SERINE PROTEASE INHIBITOR, SERPIN
HS10566PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4
HS10567
HS10568E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS10569E3 UBIQUITIN-PROTEIN LIGASE UBR7
HS10570
HS10571CENTROSOMAL PROTEIN OF 170 KDA
HS10572
HS10573ZINC FINGER PROTEIN
HS10574ZINC FINGER AND BTB DOMAIN-CONTAINING
HS10575MYOSIN HEAVY CHAIN, NON-MUSCLE
HS10576KUNITZ-TYPE PROTEASE INHIBITOR 1
HS10577KINASE D-INTERACTING SUBSTRATE OF 220 KDA
HS10578
HS10579ALLANTOICASE
HS10580ASAP FAMILY MEMBER
HS10581CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER
HS10582TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B
HS10583TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B
HS10584KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS10585PROTEIN CBG11839-RELATED
HS10586ADHESION G-PROTEIN COUPLED RECEPTOR
HS10587VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG
HS10588-
HS10589LACTOYLGLUTATHIONE LYASE GLYOXALASE I
HS10590CONNEXIN
HS10591PHD-TYPE DOMAIN-CONTAINING PROTEIN
HS10592TAXILIN
HS10593SOLUTE CARRIER FAMILY 35
HS10594REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS10595MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1
HS10596MADF DOMAIN TRANSCRIPTION FACTOR
HS10597N-ALPHA-ACETYLTRANSFERASE 20
HS10598COLLAGEN ALPHA
HS10599CYTOCHROME C OXIDASE POLYPEPTIDE 7A
HS10600SENTRIN-SPECIFIC PROTEASE
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