About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10251SPECTRIN REPEAT CONTAINING NUCLEAR ENVELOPE PROTEIN 2
HS10252MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G
HS10253MYC TARGET PROTEIN 1
HS10254PROTEIN CBG26694
HS10255TUBBY-RELATED
HS10256-
HS10257JOUBERIN
HS10258VACUOLAR PROTEIN 8
HS10259MICROTUBULE-ASSOCIATED PROTEIN
HS10260FER-1-LIKE
HS10261MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
HS10262HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER
HS10263DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED
HS10264E3 UBIQUITIN-PROTEIN LIGASE KCMF1
HS10265ADDITIONAL SEX COMBS LIKE PROTEIN ASXL
HS10266CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
HS10267TRIFUNCTIONAL ENZYME SUBUNIT ALPHA
HS10268RIBOSOMAL PROTEIN S6 KINASE
HS10269
HS10270HOMEOBOX PROTEIN NKX
HS10271HOMEOBOX PROTEIN NKX
HS10272PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
HS10273MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER
HS10274PLEKHH PROTEIN
HS10275CCCH ZINC FINGER/TIS11-RELATED
HS10276TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER
HS10277METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN
HS10278
HS10279CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER
HS10280CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER
HS10281REST COREPRESSOR COREST PROTEIN-RELATED
HS10282PROSTAGLANDIN REDUCTASE
HS10283HELICASE RELATED
HS10284CASEIN KINASE-RELATED
HS10285CODANIN-1
HS10286STAR-RELATED LIPID TRANSFER PROTEIN 9
HS10287SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
HS10288
HS10289SYNAPTOSOMAL ASSOCIATED PROTEIN
HS10290EPHRIN
HS10291MATRIN 3/NUCLEAR PROTEIN 220-RELATED
HS10292PARALEMMIN-RELATED
HS10293LIPID PHOSPHATE PHOSPHATASE
HS10294IONOTROPIC GLUTAMATE RECEPTOR
HS10295DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
HS10296CLAUDIN
HS10297INNER MEMBRANE TRANSPORTER YGJI-RELATED
HS10298TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER
HS10299SOLUTE CARRIER FAMILY 2
HS10300MISSHAPEN LIKE KINASE 1
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