About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10001PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
HS10002CONNEXIN
HS10003CONNEXIN
HS10004HYDROXYMETHYLGLUTARYL-COA LYASE
HS10005AGAP004733-PA
HS10006UDP-GLUCOSE 4-EPIMERASE
HS10007INSULINOMA-ASSOCIATED 1
HS10008TUBERIN
HS10009CENTROSOMAL PROTEIN KIZUNA
HS10010HOMEOBOX PROTEIN NKX
HS10011HOMEOBOX PROTEIN NKX
HS10012PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
HS10013FORKHEAD BOX PROTEIN
HS10014PROTEIN KINASE C, MU
HS10015UBIQUITIN-ACTIVATING ENZYME E1
HS10016GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE
HS10017CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS
HS10018RNA PROCESSING PROTEIN LD23810P
HS10019TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG
HS10020DIMETHYLADENOSINE TRANSFERASE
HS10021CLAUDIN
HS10022FILAMIN/GPBP-INTERACTING PROTEIN
HS10023CELL CYCLE CONTROL PROTEIN 50
HS10024
HS10025COLLAGEN ALPHA
HS10026REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS10027MACROGLOBULIN / COMPLEMENT
HS10028CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS10029
HS10030UNCHARACTERIZED
HS10031DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN
HS10032CT120 PROTEIN
HS10033RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS10034BTB_2 DOMAIN-CONTAINING PROTEIN
HS10035
HS10036BRG-1 ASSOCIATED FACTOR 250 BAF250
HS10037ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
HS10038GALECTIN
HS10039INTERFERON ALPHA-INDUCIBLE PROTEIN 27
HS10040INTERFERON ALPHA-INDUCIBLE PROTEIN 27
HS10041
HS10042INTERFERON ALPHA-INDUCIBLE PROTEIN 27
HS10043INTERFERON ALPHA-INDUCIBLE PROTEIN 27
HS10044INTERFERON ALPHA-INDUCIBLE PROTEIN 27
HS10045CYTOSOLIC 5'-NUCLEOTIDASE 1 FAMILY MEMBER
HS10046MYC PROTO-ONCOGENE
HS10047MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
HS10048ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS10049NANCE-HORAN SYNDROME PROTEIN
HS10050SYNCOILIN
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