About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09851ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
HS09852VIRAL ENVELOPE PROTEIN
HS09853SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS09854PROTEASE M1 ZINC METALLOPROTEASE
HS09855OPSIN
HS09856GLUCOSAMINE-6-PHOSPHATE ISOMERASE
HS09857D-GLUTAMATE CYCLASE, MITOCHONDRIAL
HS09858LYSOPHOSPHATIDIC ACID RECEPTOR 5/SPHINGOSYLPHOSPHORYLCHOLINE RECEPTOR
HS09859PROTEIN CBG26694
HS09860ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS09861HOOK PROTEINS
HS09862REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09863MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
HS09864
HS09865MOLYBDOPTERIN BIOSYNTHESIS PROTEIN
HS09866
HS09867TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 1
HS09868TUBEROINFUNDIBULAR PEPTIDE OF 39 RESIDUES
HS09869REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09870RAB GDP/GTP EXCHANGE FACTOR
HS09871
HS09872BETA/GAMMA CRYSTALLIN
HS09873CELL ADHESION MOLECULE
HS09874OXIDASE/PEROXIDASE
HS09875MYELIN TRANSCRIPTION FACTOR 1-RELATED
HS09876WD-REPEAT PROTEIN
HS09877D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
HS09878ACIREDUCTONE DIOXYGENASE
HS09879ALCOHOL DEHYDROGENASE RELATED
HS09880TRANSAMIDASE
HS09881
HS09882SOLEUCYL-TRNA SYNTHETASE
HS09883RAB3-GAP REGULATORY DOMAIN
HS09884POTASSIUM CHANNEL, SUBFAMILY K
HS09885POTASSIUM CHANNEL, SUBFAMILY K
HS09886POTASSIUM CHANNEL, SUBFAMILY K
HS09887KINESIN-RELATED
HS09888FORMIN HOMOLOGY 2 FAMILY MEMBER
HS09889MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A
HS09890VOLTAGE-GATED POTASSIUM CHANNEL
HS09891V-TYPE PROTON ATPASE SUBUNIT C
HS09892CYTOCHROME P450 508A4-RELATED
HS09893UNCHARACTERIZED
HS09894REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09895ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
HS09896CALCIUM-SENSING RECEPTOR-RELATED
HS09897COLLAGEN ALPHA
HS09898WD REPEAT DOMAIN-RELATED
HS09899REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09900VOLTAGE-GATED POTASSIUM CHANNEL
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