About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09701UBIQUITIN LIGASE E3 ALPHA-RELATED
HS09702TETRASPANIN
HS09703ELYS PROTEIN
HS09704
HS09705
HS09706TRANSMEMBRANE PROTEIN 179
HS09707CONSORTIN
HS09708SI:CH211-196P9.1-RELATED
HS09709UNCHARACTERIZED
HS09710L-ASPARAGINASE
HS09711ADP RIBOSYLATION FACTOR-RELATED
HS09712HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
HS09713DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
HS09714KINECTIN
HS09715E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED
HS09716
HS09717TRANSMEMBRANE PROTEIN 260
HS09718HOMEOBOX PROTEIN
HS09719SEC10
HS09720AP-5 COMPLEX SUBUNIT MU-1
HS09721UNCHARACTERIZED
HS09722VASCULAR ENDOTHELIAL GROWTH FACTOR
HS09723CLOCK-INTERACTING PACEMAKER
HS09724PALMITOYLTRANSFERASE ZDHHC16
HS09725PROBABLE MEMBRANE PROTEIN DUF221-RELATED
HS09726BLR2807 PROTEIN
HS09727UNCHARACTERIZED
HS09728UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL
HS09729ADENOSINE/GUANOSINE DIPHOSPHATASE
HS09730COILED-COIL DOMAIN-CONTAINING 166
HS09731MALEYLACETOACETATE ISOMERASE
HS09732ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5
HS09733LD35087P
HS09734AUTOPHAGY-RELATED 2, ISOFORM A
HS09735UNCHARACTERIZED
HS09736NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED
HS09737IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
HS09738WD-40 REPEAT PROTEIN
HS09739WD-40 REPEAT PROTEIN
HS09740TETRATRICOPEPTIDE REPEAT PROTEIN 8
HS09741MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
HS09742MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
HS09743PROTEIN CBG16200
HS09744ACYLPHOSPHATASE
HS09745DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
HS09746TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
HS09747FOS TRANSCRIPTION FACTOR-RELATED
HS09748FOS TRANSCRIPTION FACTOR-RELATED
HS09749MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED
HS09750MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED
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