About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09401HIGH-AFFINITY CHOLINE TRANSPORTER 1
HS09402SARCOMA ANTIGEN NY-SAR-95-RELATED
HS09403ANOCTAMIN
HS09404PERIODIC TRYPTOPHAN PROTEIN 1
HS09405MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L42
HS09406UBIQUITIN-CONJUGATING ENZYME E2
HS09407DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE
HS09408PLAKOPHILLIN-RELATED
HS09409RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
HS09410TERF1-INTERACTING NUCLEAR FACTOR 2
HS09411TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED
HS09412ROUND SPERMATID BASIC PROTEIN 1
HS09413FAM11A, B PROTEIN
HS09414PUTATIVE HOMEODOMAIN TRANSCRIPTION FACTOR PHTF
HS09415ADIPOR/PROGESTIN RECEPTOR-RELATED
HS09416WNT RELATED
HS09417UNCHARACTERIZED
HS09418ELKS/RAB6-INTERACTING/CAST PROTEIN
HS09419B-BOX DOMAIN CONTAINING
HS09420B-BOX DOMAIN CONTAINING
HS09421NINJURIN-RELATED
HS09422SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED
HS09423TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT BIT61-RELATED
HS09424KRAB DOMAIN C2H2 ZINC FINGER
HS09425N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D
HS09426PROTEIN AF-9 HOMOLOG
HS09427CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR
HS09428VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
HS09429SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
HS09430TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1
HS09431VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
HS09432VACUOLAR CALCIUM ION TRANSPORTER
HS09433ZINC FINGER AND BTB DOMAIN-CONTAINING
HS09434TETRASPANIN
HS09435FRIZZLED
HS09436KELCH DOMAIN-CONTAINING PROTEIN 10
HS09437NUCLEAR-INTERACTING PARTNER OF ALK
HS09438UBIQUITIN-CONJUGATING ENZYME E2
HS09439NUCLEAR RESPIRATORY FACTOR 1
HS09440PLEXIN
HS09441TRANSPOSABLE ELEMENT-RELATED
HS09442COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6
HS09443EXOCYST COMPLEX COMPONENT 4
HS09444GUANYLATE KINASE-RELATED
HS09445COLLAGEN ALPHA
HS09446UROCORTIN-2 AND 3
HS09447COATOMER SUBUNIT GAMMA
HS09448MONOACYLGLYCEROL LIPASE
HS09449CATION TRANSPORTING ATPASE
HS09450
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