About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09301FI18025P1
HS09302SUBGROUP IIII AMINOTRANSFERASE
HS09303LYMPHOID-RESTRICTED MEMBRANE PROTEIN, JAW1
HS09304LUNG ADENOMA SUSCEPTIBILITY 1-RELATED
HS09305GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED
HS09306SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
HS09307TRANSPOSABLE ELEMENT-RELATED
HS09308UNCHARACTERIZED
HS09309TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE
HS09310FAT ATYPICAL CADHERIN-RELATED
HS09311GRAM DOMAIN-CONTAINING PROTEIN 4
HS09312SPHINGOSINE KINASE
HS09313TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
HS09314REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09315ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS09316CHEMOKINE-LIKE PROTEIN TAFA-5-RELATED
HS09317REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09318PHD FINGER PROTEINS
HS09319ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
HS09320
HS09321GLYCOSYLTRANSFERASE
HS09322STABILIN
HS09323SERINE/THREONINE-PROTEIN KINASE PIM
HS09324INTERLEUKIN-17 RECEPTOR
HS09325PROTEIN PHOSPHATASE 2C
HS09326UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS09327SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS09328SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS09329LYSINE-SPECIFIC DEMETHYLASE
HS09330ALDO/KETO REDUCTASE
HS09331TRANSCRIPTION INTERMEDIARY FACTOR
HS09332EGF-LIKE DOMAIN-CONTAINING PROTEIN
HS09333ATAXIN-10
HS09334WNT RELATED
HS09335
HS09336NUCLEAR HORMONE RECEPTOR
HS09337CYSTEINE-RICH PDF MOTIF DOMAIN-CONTAINING PROTEIN 1
HS09338
HS09339CYCLIN-DEPENDENT KINASE INHIBITOR 1
HS09340DENN DOMAIN-CONTAINING PROTEIN 2
HS09341MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B
HS09342CYCLIN-DEPENDENT KINASE INHIBITOR 1-RELATED
HS09343BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS09344ODD-SKIPPED - RELATED
HS09345UNCHARACTERIZED
HS09346ADENOSYLHOMOCYSTEINASE
HS09347PROTEIN REQUIRED FOR HYPHAL ANASTOMOSIS HAM-2
HS09348MORN REPEAT-CONTAINING PROTEIN 2
HS09349ATP-DEPENDENT RNA HELICASE
HS09350SMALL LYSINE-RICH PROTEIN 1
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