About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09001
HS09002CCR4 NOT-RELATED
HS09003CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA
HS09004CYTOKINE RECEPTOR
HS09005-
HS09006PROTEIN-TYROSINE-PHOSPHATASE
HS09007
HS09008
HS09009
HS09010TETRASPANIN
HS09011-
HS09012GLYCOPROTEIN HORMONE RECEPTOR
HS09013POL PROTEIN
HS09014ENDONUCLEASE-RELATED
HS09015UNCHARACTERIZED
HS09016CHAPERONIN
HS09017
HS09018BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED
HS09019
HS09020SI:CH211-156B7.4
HS09021SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
HS09022
HS09023THYMIDINE PHOSPHORYLASE
HS09024LSM1
HS09025GLUTAMATE RECEPTOR-INTERACTING PROTEIN GRIP
HS09026TIP120
HS09027SERINE/THREONINE-PROTEIN KINASE PIM
HS09028RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS09029
HS09030NUCLEAR PROTEIN MDM1
HS09031INTERLEUKIN-22
HS09032
HS09033INTERFERON GAMMA
HS09034PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
HS09035DUAL SPECIFICITY PROTEIN KINASE
HS09036F-BOX ONLY PROTEIN 15
HS09037POLYCOMB GROUP PROTEIN
HS09038INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
HS09039INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
HS09040KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG
HS09041ATP SYNTHASE GAMMA CHAIN
HS09042
HS09043-
HS09044TRANSCRIPTION FACTOR GATA FAMILY MEMBER
HS09045REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09046NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
HS09047
HS09048
HS09049REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09050RNA BINDING PROTEIN
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