About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08801GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS08802UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS08803REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
HS08804METHYL-CPG-BINDING PROTEIN
HS08805VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
HS08806MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED
HS08807CELL DIVISION PROTEIN KINASE
HS08808MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10
HS08809ETS
HS08810SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
HS08811OTU DOMAIN CONTAINING PROTEIN
HS08812NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
HS08813SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS08814BCR-ASSOCIATED PROTEIN, BAP
HS08815
HS08816PLEXIN
HS08817
HS08818VOLTAGE-GATED POTASSIUM CHANNEL
HS08819REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08820ACROSIN-RELATED
HS08821ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8
HS08822REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08823PROSAPOSIN RECEPTOR GPR37 FAMILY MEMBER
HS08824GRIP-1 ASSOCIATED PROTEIN 1
HS08825MIR DOMAIN-CONTAINING PROTEIN
HS08826DEOXYRIBONUCLEASE
HS08827SIGNAL PEPTIDE PEPTIDASE
HS08828MRG-BINDING PROTEIN
HS08829PROLINE-RICH TRANSMEMBRANE PROTEIN 3
HS08830SULFOTRANSFERASE SULT
HS08831
HS08832-
HS088338-OXOGUANINE DNA GLYCOSYLASE
HS08834GLUTAMINE-TRNA LIGASE
HS08835ZINC FINGER MYM-TYPE PROTEIN
HS08836RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
HS08837PERIPHILIN 1
HS08838LIM DOMAIN-CONTAINING PROTEIN
HS08839AMMONIUM TRANSPORTER
HS08840OPSIN
HS08841MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED
HS08842BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED
HS08843MACROPHAGE COLONY STIMULATING FACTOR
HS08844EUKARYOTIC TRANSLATION INITIATION FACTOR 2D
HS08845REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08846SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED
HS08847RNA BINDING PROTEIN
HS08848
HS0884914-3-3 PROTEIN
HS08850
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