About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08551TUBULIN
HS08552MELANOCYTE PROTEIN PMEL 17-RELATED
HS08553SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN
HS08554CYCLIN
HS08555UNCHARACTERIZED
HS08556NCK-ASSOCIATED PROTEIN 5
HS08557
HS08558BAX INHIBITOR-RELATED
HS08559DULLARD PROTEIN PHOSPHATASE
HS08560SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER
HS08561E3 UBIQUITIN-PROTEIN LIGASE MARCH4-LIKE
HS08562TETRASPANIN
HS08563CENTAURIN-GAMMA-1A
HS08564ZINC FINGER PROTEIN
HS08565G-PROTEIN COUPLED RECEPTOR 182 AND ESTROGEN RECEPTOR 1
HS08566PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
HS08567THYROTROPIN-RELEASING HORMONE RECEPTOR
HS08568DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEIN
HS08569
HS08570SOLUTE CARRIER FAMILY 13 MEMBER
HS08571BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS08572UNCHARACTERIZED
HS08573ZINC FINGER PROTEIN
HS08574SOLUTE CARRIER FAMILY 52
HS08575UBIQUITIN-CONJUGATING ENZYME E2
HS08576TRANSMEMBRANE PROTEIN 189
HS08577CCAAT/ENHANCER BINDING PROTEIN
HS08578TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 61F
HS08579KELCH PROTEIN
HS08580LYSINE-SPECIFIC DEMETHYLASE
HS08581RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS08582XK-RELATED PROTEIN
HS08583CDK5 AND ABL1 ENZYME SUBSTRATE 1
HS08584ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN
HS08585OXYSTEROL-BINDING PROTEIN-RELATED
HS08586UNCHARACTERIZED
HS08587CHROMOSOME 10, WHOLE GENOME SHOTGUN SEQUENCE
HS08588DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED
HS08589MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
HS08590DEATH DOMAIN-CONTAINING PROTEIN
HS08591PANCREATIC PROGENITOR CELL DIFFERENTIATION AND PROLIFERATION FACTOR
HS08592T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED
HS08593TUMOR PROTEIN D52
HS08594DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG
HS08595RAN BINDING PROTEIN 9-RELATED
HS08596SOLUTE CARRIER FAMILY 17
HS08597YTH YT521-B HOMOLOGY DOMAIN-CONTAINING
HS08598PHOSPHOPROTEIN ASSOCIATED WITH GLYCOSPHINGOLIPID-ENRICHED MICRODOMAINS 1
HS08599URIDINE KINASE
HS08600STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 10
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