About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08451SPERM PROTEIN HOMOLOG
HS08452
HS08453CITRATE SYNTHASE
HS08454PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
HS08455RAC GTPASE-ACTIVATING PROTEIN 1
HS084563-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
HS08457AMPHIPHYSIN
HS08458
HS08459DAZ-ASSOCIATED PROTEIN 2
HS08460POU DOMAIN
HS08461TRANSCRIPTION FACTOR CP2
HS08462TGF-BETA INDUCED APOPTOSIS PROTEIN
HS08463INTEGRIN ALPHA
HS08464GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS08465HEME TRANSPORTER HRG1
HS08466REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08467VIRAL ENVELOPE PROTEIN
HS08468SULFATE TRANSPORTER
HS08469
HS08470PLEXIN
HS08471REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08472HEMATOPOIETIC PROGENITOR CELL ANTIGEN CD34
HS08473B-BOX DOMAIN CONTAINING
HS08474PROTEIN CBR-CLEC-78
HS08475TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED
HS08476ROUND SPERMATID BASIC PROTEIN 1
HS08477PROTEIN CBG26694
HS08478MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED
HS08479REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08480
HS08481
HS08482CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
HS08483ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS08484PROTEIN SIDEKICK
HS08485SERINE/THREONINE PROTEIN KINASE
HS08486TRYPSIN-RELATED
HS08487TRYPSIN-RELATED
HS08488PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
HS08489MITOCHONDRIAL UBIQUITIN LIGASE ACTIVATOR OF NFKB 1
HS08490VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B2-RELATED
HS08491ATP-DEPENDENT RNA HELICASE DBP3
HS08492
HS08493GLYCOLIPID TRANSFER PROTEIN-RELATED
HS08494CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER
HS08495G-PROTEIN COUPLED RECEPTOR
HS08496PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN 1
HS08497CENTAURIN/ARF
HS08498ADIPOLIN
HS08499DUAL SPECIFICITY PROTEIN KINASE
HS08500RETICULOCALBIN
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