About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08401DEATH DOMAIN-CONTAINING PROTEIN
HS08402TYROSINE-PROTEIN KINASE
HS08403TYROSINE-PROTEIN KINASE
HS08404PANCREATIC PROGENITOR CELL DIFFERENTIATION AND PROLIFERATION FACTOR
HS08405TUMOR PROTEIN D52
HS08406E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
HS08407DNAJ HOMOLOG SUBFAMILY C MEMBER 5 HOMOLOG
HS08408ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN
HS08409NETRIN/LAMININ-RELATED
HS08410CRYPTOCHROME
HS08411TUBULIN
HS0841240S RIBOSOMAL PROTEIN S21
HS08413RAB FAMILY
HS08414TRANSMEMBRANE PROTEIN 81
HS08415UNCHARACTERIZED
HS08416
HS08417REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08418REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08419
HS08420NEUROPEPTIDES RECEPTOR
HS08421NEUROPEPTIDES RECEPTOR
HS08422TRANSPOSABLE ELEMENT-RELATED
HS08423FAM187
HS08424REGULATOR OF G PROTEIN SIGNALING
HS08425TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
HS08426SOX TRANSCRIPTION FACTOR
HS08427XK-RELATED PROTEIN
HS08428CEREBRAL CAVERNOUS MALFORMATIONS PROTEIN 2 HOMOLOG
HS08429CDK5 AND ABL1 ENZYME SUBSTRATE 1
HS08430SHORT-CHAIN DEHYDROGENASE/REDUCTASE
HS08431CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
HS08432DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
HS08433NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS08434MONOCARBOXYLATE TRANSPORTER
HS08435OS06G0237300 PROTEIN
HS08436RAN BINDING PROTEIN 9-RELATED
HS08437INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN
HS08438TRANSMEMBRANE PROTEIN 198 FAMILY MEMBER
HS08439PYM PROTEIN
HS08440SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2-RELATED
HS08441DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2
HS08442ORMDL PROTEINS
HS08443UNCHARACTERIZED
HS08444TETRASPANIN
HS08445LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN
HS08446UNCHARACTERIZED
HS08447NUCLEAR HORMONE RECEPTOR
HS08448DIACYLGLYCEROL KINASE
HS08449TNF RECEPTOR ASSOCIATED FACTOR
HS08450ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
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