About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08501OLFACTOMEDIN-RELATED
HS08502SYNAPTOTAGMIN
HS08503KELCH PROTEIN
HS08504KRAB AND ZINC FINGER DOMAIN-CONTAINING
HS08505CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P
HS08506PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7
HS08507UNCHARACTERIZED
HS08508IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
HS08509TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5
HS08510FORMIN HOMOLOGY 2 FAMILY MEMBER
HS08511CEREBELLIN-RELATED
HS08512GNAT FAMILY N-ACETYLTRANSFERASE
HS08513PREFOLDIN SUBUNIT 4
HS08514
HS08515ZINC FINGER PROTEIN
HS08516TEASHIRT-RELATED
HS08517ZINC FINGER PROTEIN 142
HS08518SAL-LIKE PROTEIN
HS08519PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
HS08520NFAT
HS08521VOLTAGE-GATED POTASSIUM CHANNEL
HS08522TYROSINE-PROTEIN KINASE
HS08523CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS08524SERINE/THREONINE-PROTEIN KINASE
HS08525G0/G1 SWITCH PROTEIN 2
HS08526TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8
HS08527VACUOLAR ATP SYNTHASE SUBUNIT S1
HS08528RAB GDP-DISSOCIATION INHIBITOR
HS08529INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
HS085306-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE
HS08531EG:EG0003.4 PROTEIN-RELATED
HS08532NEUROPEPTIDE S RECEPTOR
HS08533NEUROPEPTIDE S RECEPTOR
HS08534CONNECTIVE TISSUE GROWTH FACTOR-RELATED
HS08535ADENOSINE DEAMINASE
HS08536CAMP-DEPENDENT PROTEIN KINASE INHIBITOR/PKI
HS08537ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED
HS08538NUCLEAR HORMONE RECEPTOR
HS08539NUCLEOPORIN P54
HS08540SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED
HS08541
HS08542
HS08543UNCHARACTERIZED
HS08544GDAP1, ISOFORM A
HS08545GH28348P
HS08546TUBULIN
HS08547TUBULIN
HS08548TUBULIN
HS08549TUBULIN
HS08550TUBULIN
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