About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08651CHITINASE
HS08652
HS08653CHITINASE
HS08654PROTEIN CBG26694
HS08655CHITINASE
HS08656CHITINASE
HS08657CHITINASE
HS08658PROTEIN SIDEKICK
HS08659CALCIUM-INDEPENDENT PHOSPHOLIPASE A2-GAMMA
HS08660SI:CH73-390P7.2
HS08661MONOCARBOXYLATE TRANSPORTER
HS08662CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER
HS08663CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER
HS08664UBIQUITIN-ACTIVATING ENZYME E1
HS08665
HS08666PRA1 PROTEIN
HS08667TROPOMODULIN
HS08668FERM DOMAIN-CONTAINING PROTEIN 4
HS08669MIP04163P
HS08670FORKHEAD BOX P, ISOFORM C
HS08671EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED
HS08672
HS08673CALCIUM BINDING PROTEINS
HS08674PROTEIN C6ORF130
HS08675SYNAPTOTAGMIN
HS08676PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
HS08677
HS08678TITIN
HS08679METABOTROPIC GLUTAMATE RECEPTOR
HS08680HIGH MOBILITY GROUP PROTEINS HMG-A AND C
HS08681SMALL INTEGRAL MEMBRANE PROTEIN 29
HS08682PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS08683ETS
HS08684OVARIAN CARCINOMA ANTIGEN CA125-RELATED
HS08685UNCHARACTERIZED
HS08686TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED
HS08687ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
HS08688SPECIFICALLY ANDROGEN-REGULATED GENE PROTEIN
HS08689SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
HS08690COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
HS086916-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE
HS08692DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN
HS08693KH DOMAIN CONTAINING RNA BINDING PROTEIN
HS08694SERINE-THREONINE PROTEIN KINASE
HS08695ALADIN/ADRACALIN/AAAS
HS08696COLLAGEN ALPHA
HS08697GLUTAMINASE
HS08698E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
HS08699AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
HS08700TRANSPOSON TY3-I GAG-POL POLYPROTEIN
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