About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08351IMMUNOGLOBULIN FC RECEPTOR
HS08352MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
HS08353STEERIN
HS08354TROPONIN I
HS08355RHO-GTPASE-ACTIVATING PROTEIN LRG1
HS08356PLECKSTRIN HOMOLOGY-LIKE DOMAIN, PQ-RICH PROTEIN
HS08357LADININ 1
HS08358TROPONIN T
HS08359PLAKOPHILLIN-RELATED
HS08360TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED
HS08361
HS08362OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
HS08363ETS
HS08364GLYCOPROTEIN HORMONE RECEPTOR
HS08365UBIQUITIN-CONJUGATING ENZYME E2
HS08366ZGC:194242
HS08367ETS
HS08368CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED
HS08369VOLTAGE-GATED POTASSIUM CHANNEL
HS08370VOLTAGE-GATED POTASSIUM CHANNEL
HS08371VOLTAGE-GATED POTASSIUM CHANNEL
HS08372GLYCOPROTEIN HORMONE BETA CHAIN
HS08373NERVE GROWTH FACTOR NGF -RELATED
HS08374TETRASPANIN
HS08375MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED
HS08376SERINE/THREONINE-PROTEIN KINASE
HS08377RNA-BINDING PROTEIN
HS08378UBIQUITIN-ACTIVATING ENZYME E1
HS08379RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
HS08380UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS08381RHO FAMILY GTPASE
HS08382LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
HS08383TRANSKETOLASE
HS08384EXTRACELLULAR MATRIX PROTEIN 2-RELATED
HS08385AGAP008170-PA
HS08386BETA-1,4-GALACTOSYLTRANSFERASE
HS08387VACUOLAR ATP SYNTHASE SUBUNIT S1
HS08388VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
HS08389SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
HS08390WNT RELATED
HS08391ELKS/RAB6-INTERACTING/CAST PROTEIN
HS08392TOLL-LIKE RECEPTOR 7-RELATED
HS08393SERINE PEPTIDASE S9 FAMILY MEMBER
HS08394F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
HS08395FILAMIN/GPBP-INTERACTING PROTEIN
HS08396ACETYL-COENZYME A SYNTHETASE
HS08397MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
HS08398DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED
HS08399DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED
HS08400COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER
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