About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08251FANCONI ANEMIA GROUP E PROTEIN
HS08252MAKORIN-RELATED
HS08253NUCLEAR HORMONE RECEPTOR
HS08254SWAP-70 RECOMBINASE
HS08255
HS08256DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED
HS08257CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN
HS08258ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
HS08259LUPUS LA PROTEIN-RELATED
HS08260PHOSPHOFRUCTOKINASE
HS08261ACROSIN-RELATED
HS08262VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
HS08263AAA DOMAIN-CONTAINING
HS08264SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION
HS08265AQUAPORIN TRANSPORTER
HS08266DELTEX-RELATED
HS08267DELTEX-RELATED
HS08268RHO FAMILY GTPASE
HS08269VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT
HS08270ADENYLATE CYCLASE TYPE 1
HS08271N-ACETYLGALACTOSAMINYLTRANSFERASE
HS08272GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD
HS08273SPHINGOSINE KINASE
HS08274N-TERMINAL ACETYLTRANSFERASE
HS08275SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN
HS08276TRANSLOCON-ASSOCIATED PROTEIN, DELTA SUBUNIT
HS08277NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS08278DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
HS08279UNCHARACTERIZED FAM3
HS08280SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED
HS08281PHD/F-BOX CONTAINING PROTEIN
HS08282PROTEIN SIDEKICK
HS08283RIB43A-RELATED
HS08284STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
HS08285VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
HS08286TRANSMEMBRANE PROTEIN 9 FAMILY MEMBER
HS08287CEREBELLIN-RELATED
HS08288MYOSIN LIGHT CHAIN 1, 3
HS08289BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
HS08290DETERIN
HS08291DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN
HS08292TACHYKININ-3
HS08293BETA1,3-GALACTOSYLTRANSFERASE
HS08294GLYCO_TRANS_2-LIKE DOMAIN-CONTAINING PROTEIN
HS08295SULFATE TRANSPORTER
HS08296KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS08297
HS08298RHO GUANINE EXCHANGE FACTOR-RELATED
HS08299ANKYRIN REPEAT CONTAINING
HS08300TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
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