About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS07951PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47
HS07952GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN
HS07953BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
HS07954CASPASE-ACTIVATED DNASE
HS07955NEPHROCYSTIN-4
HS07956ADHERENS JUNCTION-ASSOCIATED PROTEIN 1
HS07957NEUROTRANSMITTER GATED ION CHANNEL
HS07958TMEM26 PROTEIN
HS07959UNCHARACTERIZED
HS07960GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA
HS07961NAD KINASE
HS07962SOLUTE CARRIER FAMILY 35
HS07963MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
HS07964MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2
HS07965TRANSMEMBRANE PROTEIN 82
HS07966RNA RECOGNITION MOTIF-CONTAINING
HS07967EPH RECEPTOR A5
HS07968PROTEIN FAM131B-RELATED
HS07969CHLORIDE CHANNEL PROTEIN 2
HS07970HEAT SHOCK PROTEIN BETA-7-RELATED
HS07971ZINC FINGER PROTEIN
HS07972DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT
HS07973PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2
HS07974ANOCTAMIN
HS07975GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS07976RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F
HS07977CELL DIVISION PROTEIN KINASE
HS07978MATRIX METALLOPROTEINASE
HS079791,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
HS07980E3 UBIQUITIN-PROTEIN LIGASE MIB2
HS07981
HS07982SUZ DOMAIN-CONTAINING PROTEIN 1
HS07983CATION-TRANSPORTING ATPASE-RELATED
HS07984SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN
HS07985PUTATIVE ATP-ASE
HS07986TRANSMEMBRANE PROTEIN 240
HS07987OTU DOMAIN CONTAINING PROTEIN
HS07988BCAS2 PROTEIN
HS07989TRANSCRIPTION INTERMEDIARY FACTOR
HS07990SEVEN TRANSMEMBRANE PROTEIN 1-RELATED
HS07991NUCLEAR HORMONE RECEPTOR
HS07992PHD FINGER PROTEINS
HS07993MITOGEN-ACTIVATED PROTEIN KINASE
HS07994CHEMOKINE-LIKE PROTEIN TAFA-5-RELATED
HS07995TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS07996ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
HS07997FIBRINOGEN/TENASCIN/ANGIOPOEITIN
HS07998PIKACHURIN-LIKE PROTEIN
HS07999REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08000TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
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