About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS07851GH08155P
HS07852TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B
HS07853G PROTEIN-COUPLED RECEPTOR
HS07854HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H
HS07855
HS07856PORCUPINE
HS07857MYELIN TRANSCRIPTION FACTOR 1-RELATED
HS07858ADDITIONAL SEX COMBS LIKE PROTEIN ASXL
HS07859
HS07860ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS07861ZINC FINGER PROTEIN
HS07862TRANSMEMBRANE GTPASE FZO1
HS07863PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
HS07864DEATH EFFECTOR DOMAIN-CONTAINING PROTEIN
HS07865EF-HAND DOMAIN-CONTAINING PROTEIN D
HS07866G-PROTEIN COUPLED RECEPTOR 39
HS07867MICROTUBULE-ASSOCIATED PROTEIN/SYNTAPHILIN
HS07868SYNTENIN RELATED
HS07869
HS07870UBX DOMAIN CONTAINING PROTEIN
HS07871AGAP005440-PA
HS07872
HS07873BCL-2 RELATED
HS07874
HS07875GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS07876PAR-6-RELATED
HS07877NEUROPROTECTIVE PEPTIDE-CONTAINING PROTEIN
HS07878DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1
HS07879COLLAGEN ALPHA
HS07880SOLUTE CARRIER FAMILY 35
HS07881TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED
HS07882MYOSIN LIGHT CHAIN 1, 3
HS07883PHOSPHATIDYLINOSITOL KINASE
HS07884NETRIN/LAMININ-RELATED
HS07885REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS07886NETRIN/LAMININ-RELATED
HS07887UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS07888SI:DKEY-32E6.3
HS07889
HS07890RING-TYPE DOMAIN-CONTAINING PROTEIN
HS07891SERINE/THREONINE-PROTEIN KINASE SBK1
HS07892
HS07893SERINE/THREONINE-PROTEIN KINASE PIM
HS07894POL PROTEIN
HS07895ENDONUCLEASE-RELATED
HS07896
HS07897GLUTATHIONE SYNTHETASE
HS07898NUDIX T16 FAMILY MEMBER
HS07899SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN
HS07900SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN
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