About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS07801GLYCOGEN DEBRANCHING ENZYME
HS07802NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
HS07803GLYCOGEN DEBRANCHING ENZYME
HS07804CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
HS07805
HS07806ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS07807E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS07808B-BOX DOMAIN CONTAINING
HS07809X-BOX BINDING PROTEIN 1
HS07810UNCHARACTERIZED
HS07811MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L49
HS07812HAUS AUGMIN-LIKE COMPLEX SUBUNIT 7
HS07813JITTERBUG, ISOFORM N
HS07814
HS0781560S RIBOSOMAL PROTEIN L10
HS07816DEOXYRIBONUCLEASE
HS07817N-ACETYLGLUCOSAMINYLTRANSFERASE VI
HS07818ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
HS07819
HS07820SELENIDE, WATER DIKINASE
HS07821NF-KAPPA-B ESSENTIAL MODULATOR
HS07822PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN
HS07823SMALL NUCLEAR RIBONUCLEOPROTEIN
HS07824
HS07825ZINC FINGER PROTEIN
HS07826
HS07827TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
HS07828MYELIN TRANSCRIPTION FACTOR 1-RELATED
HS07829PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
HS07830UNCHARACTERIZED PROTEIN KIAA2013
HS07831PROTEIN CBG11839-RELATED
HS07832POLYCOMB GROUP PROTEIN
HS07833AMINO ACID TRANSPORTER
HS07834CADHERIN DOMAIN-CONTAINING PROTEIN
HS07835JM1 PROTEIN
HS07836TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
HS07837NADH-UBIQUINONE OXIDOREDUCTASE ESSS SUBUNIT, MITOCHONDRIAL PRECURSOR
HS07838DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
HS07839PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
HS0784060S RIBOSOMAL PROTEIN L22
HS07841PROTEIN RCC2
HS07842SOLUTE CARRIER FAMILY 2
HS07843SOLUTE CARRIER FAMILY 2
HS07844METHYLENETETRAHYDROFOLATE REDUCTASE
HS07845
HS07846CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
HS07847C-TYPE NATRIURETIC PEPTIDE
HS07848ATRIAL NATRIURETIC FACTOR PRECURSOR
HS07849ATRIAL NATRIURETIC FACTOR PRECURSOR
HS07850VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
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