About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS07901
HS07902
HS07903XAP-5 PROTEIN-RELATED
HS07904INTERLEUKIN-17 RECEPTOR
HS07905SERYL-TRNA SYNTHETASE
HS07906PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
HS07907TRANSMEMBRANE PROTEIN 106B
HS07908TENSIN
HS07909INTERMEDIATE FILAMENT
HS07910INTERMEDIATE FILAMENT
HS07911
HS07912GATA-TYPE DOMAIN-CONTAINING PROTEIN
HS07913
HS07914GATA-TYPE DOMAIN-CONTAINING PROTEIN
HS07915GATA-TYPE DOMAIN-CONTAINING PROTEIN
HS07916MITOGEN-ACTIVATED PROTEIN KINASE
HS07917PLEXIN
HS07918PLEXIN
HS07919PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED
HS07920LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
HS07921COPINE
HS07922KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS07923DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41
HS07924CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
HS07925GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1
HS07926ZINC FINGER PROTEIN 200
HS07927TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
HS07928TYROSINE-PROTEIN KINASE
HS07929RETINOBLASTOMA BINDING PROTEIN 8
HS07930TRANSCRIPTION FACTOR GATA FAMILY MEMBER
HS07931RHO FAMILY GTPASE
HS07932THIAMIN PYROPHOSPHOKINASE
HS07933GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN
HS07934THIAMIN PYROPHOSPHOKINASE
HS07935PROENKEPHALIN
HS07936EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
HS07937SERINE/THREONINE-PROTEIN KINASE
HS07938DENN DOMAIN-CONTAINING PROTEIN 2
HS07939INSULIN-LIKE GROWTH FACTOR I
HS07940
HS07941UNCHARACTERIZED
HS07942N-ACYLGLUCOSAMINE-2-EPIMERASE
HS07943PEROXISOME ASSEMBLY PROTEIN 10
HS07944PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
HS07945IONOTROPIC GLUTAMATE RECEPTOR
HS07946SKI ONCOGENE-RELATED
HS07947FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 20
HS07948REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS07949RIBOSOMAL PROTEIN S6 KINASE
HS07950PROTEIN EVA-1
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