About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08051RHO FAMILY GTPASE
HS08052SEMAPHORIN
HS08053REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08054UNCHARACTERIZED
HS08055HYALURONIDASE
HS08056DNA REPAIR PROTEIN XP-C / RAD4
HS08057RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
HS08058INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED
HS08059
HS08060DALRD3 PROTEIN
HS08061RETROTRANSPOSON
HS08062FAT ATYPICAL CADHERIN-RELATED
HS08063
HS08064WD REPEAT PROTEIN
HS08065WD REPEAT PROTEIN
HS08066SULFATE TRANSPORTER
HS08067PHOSPHOLIPASE-RELATED
HS08068CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
HS08069
HS08070
HS08071AMINOMETHYLTRANSFERASE
HS08072INTERFERON-RELATED DEVELOPMENTAL REGULATOR
HS08073SERINE PEPTIDASE S9 FAMILY MEMBER
HS08074REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08075SEMAPHORIN
HS08076UNCHARACTERIZED
HS08077
HS08078SEMAPHORIN
HS08079SELENOPROTEIN K
HS08080ACTIN
HS08081INTERLEUKIN-17 RECEPTOR
HS08082GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
HS08083VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
HS08084
HS08085TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1
HS08086BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
HS08087MSF1/PX19 RELATED
HS08088ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL
HS08089PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG
HS08090PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG
HS08091GTP-BINDING PROTEIN ALPHA SUBUNIT
HS08092VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN
HS08093CHARGED MULTIVESICULAR BODY PROTEIN
HS08094EUKARYOTIC TRANSLATION INITIATION FACTOR
HS08095RIBONUCLEOPROTEIN RB97D
HS08096POLYCOMB GROUP PROTEIN
HS08097RIBOSOMAL PROTEIN S6 KINASE
HS08098MYB PROTEIN-RELATED
HS08099NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
HS08100
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