About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08151ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12
HS08152EPITHELIAL MEMBRANE PROTEIN-RELATED
HS08153COILED-COIL DOMAIN-CONTAINING PROTEIN 30
HS08154KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS08155TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 25
HS08156TETRATRICOPEPTIDE REPEAT PROTEIN 34
HS08157CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE
HS08158EF-HAND DOMAIN-CONTAINING PROTEIN
HS08159AMINO ACID TRANSPORTER
HS08160AGAP000281-PA
HS08161WHEY ACDIC PROTEIN WAP
HS08162GPI TRANSAMIDASE COMPONENT PIG-T-RELATED
HS08163PHOSPHATASE AND ACTIN REGULATOR PHACTR
HS08164SYNAPTONEMAL COMPLEX PROTEIN-RELATED
HS08165PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT
HS08166SI:CH211-266K22.6
HS08167
HS08168TUBULIN POLYGLUTAMYLASE
HS08169PROTEIN SIDEKICK
HS08170PROTEIN SIDEKICK
HS08171PROTEIN SIDEKICK
HS08172SOMATOSTATIN
HS08173POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED
HS08174SPERMIDINE/SPERMINE SYNTHASE
HS08175COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
HS08176CELL DEATH ACTIVATOR CIDE
HS08177PEROXISOMAL MEMBRANE PROTEIN PEX14
HS08178TRANSCRIPTION FACTOR CASTOR PROTEIN MING -RELATED
HS08179GENE 572-RELATED
HS08180RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
HS081816-PHOSPHOGLUCONATE DEHYDROGENASE
HS08182STAR-RELATED LIPID TRANSFER PROTEIN 9
HS08183UBIQUITINATION FACTOR E4
HS08184FATTY ACID BINDING PROTEIN
HS08185NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE
HS08186PROTEIN LZIC
HS08187BETA-CATENIN-INTERACTING PROTEIN 1
HS08188CALSYNTENIN
HS08189BETA-CATENIN-INTERACTING PROTEIN 1
HS08190PHOSPHATIDYLINOSITOL KINASE
HS08191TRANSMEMBRANE PROTEIN 201
HS08192PROTEIN GAMETE EXPRESSED 1
HS08193
HS08194BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS08195PGC-1 AND ERR-INDUCED REGULATOR IN MUSCLE PROTEIN 1
HS08196PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY N MEMBER 1
HS08197KELCH PROTEIN
HS08198NUCLEOLAR COMPLEX 2 AND RAD4-RELATED
HS08199GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN
HS08200ATROPHIN-RELATED
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