About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08301TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
HS08302HL01030P-RELATED
HS08303HEDGEHOG
HS08304LIPOCALIN-1 INTERACTING MEMBRANE RECEPTOR LIMR
HS08305DNAJ HOMOLOG SUBFAMILY C MEMBER 22
HS08306ZINC FINGER TRANSCRIPTION FACTOR TRPS1
HS08307WNT RELATED
HS08308WNT RELATED
HS08309ADP RIBOSYLATION FACTOR-RELATED
HS08310TYROSINE-PROTEIN KINASE RECEPTOR
HS08311PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P
HS08312EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C
HS08313FORMIN-LIKE PROTEIN
HS08314LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
HS08315CELL ADHESION MOLECULE
HS08316RNA BINDING PROTEIN
HS08317SENTRIN/SUMO-SPECIFIC PROTEASE
HS08318BAX INHIBITOR-RELATED
HS08319SAM (S-ADENOSYL METHIONINE) TRANSPORTER
HS08320NUCLEAR HORMONE RECEPTOR
HS08321NUCLEAR HORMONE RECEPTOR
HS08322SKICH DOMAIN-CONTAINING PROTEIN
HS08323SEGMENTATION PROTEIN FUSHI TARAZU-LIKE PROTEIN
HS08324HOMEOBOX PROTEIN HOX-D12-RELATED
HS08325HOMEOBOX PROTEIN HOX-A11-RELATED
HS08326HOMEOBOX PROTEIN ABDOMINAL-B
HS08327AGAP004664-PA
HS08328HOMEOBOX DOMAIN-CONTAINING PROTEIN
HS08329HOMEOBOX PROTEIN HOX
HS08330HOMEOTIC PROTEIN DEFORMED
HS08331HOMEOTIC PROTEIN DEFORMED
HS08332PROTEIN ZERKNUELLT 1-RELATED
HS08333HOMEOBOX PROTEIN ROUGH-RELATED
HS08334CHROMOBOX PROTEIN
HS08335HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN
HS08336NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR
HS08337ZETA-COAT PROTEIN
HS08338ZINC FINGER PROTEIN
HS08339GLUTAMATE DECARBOXYLASE-RELATED
HS08340
HS08341CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER
HS08342RHO FAMILY GTPASE
HS08343DNA2/NAM7 HELICASE FAMILY
HS08344DNA2/NAM7 HELICASE FAMILY
HS08345WNT RELATED
HS08346PEPTIDYLPROLYL ISOMERASE
HS08347STEROL ISOMERASE
HS08348COILED-COIL DOMAIN-CONTAINING PROTEIN 115
HS08349DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
HS08350MRNA EDITING ENZYME
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