About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08101
HS08102HISTONE H2A
HS08103ACTIN
HS08104NADH-UBIQUINONE OXIDOREDUCTASE MLRQ SUBUNIT
HS08105SERINE HYDROXYMETHYLTRANSFERASE
HS08106NEUREXOPHILIN
HS08107ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
HS08108STAC
HS08109METHYL-CPG BINDING PROTEIN, DROSOPHILA
HS08110CENTROMERE PROTEIN E
HS08111PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
HS08112
HS08113CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN
HS08114CALCIUM-SENSING RECEPTOR-RELATED
HS08115BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS08116BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS08117BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS08118E3 UBIQUITIN-PROTEIN LIGASE UBR4
HS08119UNCHARACTERIZED
HS08120GENE 33 POLYPEPTIDE
HS08121BILIVERDIN REDUCTASE A
HS08122TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10
HS08123PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
HS08124COLD SHOCK DOMAIN CONTAINING PROTEINS
HS08125GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS08126ESPIN
HS08127BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS08128BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS08129ACYL COENZYME A THIOESTER HYDROLASE
HS08130G-PROTEIN COUPLED RECEPTOR 153, 162
HS08131
HS08132CALCIUM-SENSING RECEPTOR-RELATED
HS08133PROTEIN RER1
HS08134CELLULAR TUMOR ANTIGEN P53
HS08135WD REPEAT PROTEIN 8-RELATED
HS08136TUMOR PROTEIN P63-REGULATED GENE 1-LIKE PROTEIN
HS08137CEREBELLIN-RELATED
HS08138ZINC FINGER PROTEIN
HS08139CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER
HS08140CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER
HS08141
HS08142TRANSMEMBRANE PROTEIN 51
HS08143KAZRIN-RELATED
HS08144KAZRIN-RELATED
HS08145
HS08146PR DOMAIN ZINC FINGER PROTEIN
HS08147PODOPLANIN
HS08148FORKHEAD BOX PROTEIN J2 FAMILY MEMBER
HS08149ENDOTHELIN
HS08150RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN
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