About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08001UNCHARACTERIZED
HS08002CARBOHYDRATE SULFOTRANSFERASE
HS08003
HS08004SI:CH211-196P9.1-RELATED
HS08005REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08006REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08007REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08008PLEXIN
HS08009HISTONE H3
HS08010REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08011MICOS COMPLEX SUBUNIT MIC25
HS08012B-BOX DOMAIN CONTAINING
HS08013BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
HS08014HISTONE DEACETYLASE HDAC1-RELATED
HS08015NUCLEAR HORMONE RECEPTOR
HS08016PDF RECEPTOR-LIKE PROTEIN-RELATED
HS08017REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08018HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
HS08019KRAB AND ZINC FINGER DOMAIN-CONTAINING
HS08020TRANSCRIPTION FACTOR E2F
HS08021PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
HS08022BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN
HS08023V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
HS08024TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER
HS08025ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN
HS08026NEUROTRANSMITTER GATED ION CHANNEL
HS08027POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4
HS08028DEP DOMAIN PROTEIN
HS08029UNCHARACTERIZED
HS08030COLLAGEN ALPHA
HS08031TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4
HS080325-HYDROXYTRYPTAMINE RECEPTOR
HS08033UNCHARACTERIZED
HS08034SIKE FAMILY MEMBER
HS08035UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN
HS08036RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
HS08037AMP DEAMINASE
HS08038DENN DOMAIN-CONTAINING PROTEIN 2
HS08039
HS08040RAD54-LIKE
HS08041PICCOLO/BASSOON
HS08042REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS08043OXYSTEROL-BINDING PROTEIN-RELATED
HS08044UNCHARACTERIZED
HS08045TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS08046DNAJ HOMOLOG SUBFAMILY C MEMBER 16
HS08047
HS08048CARBOHYDRATE SULFOTRANSFERASE
HS08049ORGANIC ANION TRANSPORTER
HS08050PLACENTAL PROTEIN 6
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