About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS08851SMALL INTEGRAL MEMBRANE PROTEIN 4
HS08852POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
HS08853
HS08854LONGEVITY ASSURANCE FACTOR 1 LAG1
HS08855NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
HS08856ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1
HS08857SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS08858GLUTAMATE RECEPTOR-INTERACTING PROTEIN GRIP
HS0885960S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N
HS08860PROTEIN SSUH2 HOMOLOG
HS08861VPRBP PROTEIN-RELATED
HS08862DEDICATOR OF CYTOKINESIS
HS08863KH DOMAIN CONTAINING RNA BINDING PROTEIN
HS08864
HS08865DYSTROGLYCAN-RELATED
HS08866METABOTROPIC GLUTAMATE RECEPTOR
HS08867UNCHARACTERIZED
HS08868MOLTING PROTEIN MLT-4
HS08869DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
HS08870RAN BINDING PROTEIN 9-RELATED
HS08871SOLUTE CARRIER FAMILY 17
HS08872BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
HS08873
HS08874
HS08875YTH YT521-B HOMOLOGY DOMAIN-CONTAINING
HS08876TRANSPOSABLE ELEMENT-RELATED
HS08877
HS08878INHIBITOR OF APOPTOSIS
HS08879T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED
HS08880-
HS08881PHOSPHOPROTEIN ASSOCIATED WITH GLYCOSPHINGOLIPID-ENRICHED MICRODOMAINS 1
HS08882PAPILLOMAVIRUS REGULATORY FACTOR PRF-1
HS08883
HS08884AGAP004733-PA
HS08885KRAB AND ZINC FINGER DOMAIN-CONTAINING
HS08886
HS08887URIDINE KINASE
HS08888ZINC FINGER PROTEIN-RELATED
HS08889STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 10
HS08890PRE-MRNA SPLICING FACTOR
HS08891A1 CISTRON SPLICING FACTOR AAR2-RELATED
HS08892
HS08893EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
HS08894SODIUM/HYDROGEN EXCHANGER
HS08895PROTEIN CBG11839-RELATED
HS08896SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC
HS08897ZINC FINGER, RING/FYVE/PHD-TYPE
HS08898TRANSCRIPTION FACTOR MAF
HS08899
HS08900NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
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