About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09251
HS09252REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09253ANTIGEN BSP, PUTATIVE-RELATED
HS09254AMINO ACID TRANSPORTER
HS09255AMINO ACID TRANSPORTER
HS09256PROTEIN SCAF11
HS09257AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2
HS09258TRANSGELIN
HS09259TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3
HS09260SIKE FAMILY MEMBER
HS09261RNA POLYMERASE II HOLOENZYME COMPONENT SRB7
HS09262SERINE/THREONINE-PROTEIN KINASE
HS09263SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
HS09264SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER
HS09265ALDEHYDE DEHYDROGENASE-RELATED
HS09266SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSED
HS09267DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41
HS09268SI:CH211-196P9.1-RELATED
HS09269CARBOHYDRATE SULFOTRANSFERASE
HS09270REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09271CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED
HS09272PODOCALYXIN
HS09273
HS09274MUSKELIN
HS09275RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
HS09276RAB GDP-DISSOCIATION INHIBITOR
HS09277ANKYRIN REPEAT CONTAINING
HS09278TRANSMEMBRANE PROTEIN 178B-RELATED
HS09279
HS09280KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS09281FACIOGENITAL DYSPLASIA PROTEIN
HS09282LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED
HS09283ADP RIBOSYLATION FACTOR-RELATED
HS09284THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
HS09285CGI-121 FAMILY MEMBER
HS09286ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10
HS09287COPINE
HS09288CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
HS09289
HS09290ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
HS09291CDNA SEQUENCE CN725425
HS09292PROTON MYO-INOSITOL COTRANSPORTER
HS09293REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09294EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
HS09295EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
HS09296ORGANIC ANION TRANSPORTER
HS09297ORGANIC ANION TRANSPORTER
HS09298CALCITONIN-RELATED
HS09299PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING
HS09300CHOLINE/ETHANOALAMINE KINASE
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