About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09201ALPHA- 1,3 -FUCOSYLTRANSFERASE
HS09202DEP DOMAIN-CONTAINING
HS09203SCY1-RELATED S/T PROTEIN KINASE-LIKE
HS09204
HS09205POLY [ADP-RIBOSE] POLYMERASE
HS09206POLY [ADP-RIBOSE] POLYMERASE
HS09207SI:CH73-193C12.2-RELATED
HS09208EPIPHYCAN-RELATED
HS09209AGAP008170-PA
HS09210AGAP008170-PA
HS09211AGAP008170-PA
HS09212AGAP008170-PA
HS09213
HS09214B-CELL TRANSLOCATION GENE
HS09215UNCHARACTERIZED FAM3
HS09216ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS09217SORTILIN RELATED
HS09218INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED
HS09219PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
HS09220LD15586P
HS09221EBNA2 BINDING PROTEIN P100
HS09222ANTIGEN BSP, PUTATIVE-RELATED
HS09223PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
HS09224PLASMINOGEN-RELATED
HS09225VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
HS09226PICCOLO/BASSOON
HS09227SEMAPHORIN
HS09228TETRASPANIN
HS09229B-BOX DOMAIN CONTAINING
HS09230PROTEIN ARGININE N-METHYLTRANSFERASE
HS09231RAS-RELATED PROTEIN RAB
HS09232
HS09233UNCHARACTERIZED
HS09234CGI-41 METHYLTRANSFERASE
HS09235PROTEIN O-MANNOSYL-TRANSFERASE TMTC2
HS09236
HS09237POLY [ADP-RIBOSE] POLYMERASE
HS09238SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS09239SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS09240GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS09241REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS09242
HS09243RETROTRANSPOSON
HS09244TROPONIN I
HS09245IMPORTIN-7, 8, 11
HS09246GPI-ANCHORED PROTEIN P137
HS09247-
HS09248EPM2A-INTERACTING PROTEIN 1
HS09249NXPE FAMILY MEMBER
HS09250ANOCTAMIN
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