About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09501MAKORIN-RELATED
HS09502CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
HS09503SUSHI DOMAIN-CONTAINING PROTEIN 3
HS09504SOLUTE CARRIER FAMILY 13 MEMBER
HS09505CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG
HS09506RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
HS09507HMG BOX-CONTAINING PROTEIN 1
HS09508PHOSPHATIDYLINOSITOL KINASE
HS09509ANOCTAMIN
HS09510NERVE GROWTH FACTOR NGF -RELATED
HS09511NXPE FAMILY MEMBER
HS09512POL PROTEIN
HS09513NXPE FAMILY MEMBER
HS09514NXPE FAMILY MEMBER
HS095156-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE
HS09516SPLICING FACTOR 45 SPF45
HS09517INTERLEUKIN-15 RECEPTOR SUBUNIT ALPHA
HS09518
HS09519UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER
HS09520UDP/ADP-SUGAR PYROPHOSPHATASE
HS09521D123 PROTEIN
HS09522
HS09523SERINE/THREONINE-PROTEIN KINASE
HS09524COILED-COIL DOMAIN-CONTAINING PROTEIN 3
HS09525NF-KAPPA-B ESSENTIAL MODULATOR
HS09526FIBRINOGEN/TENASCIN/ANGIOPOEITIN
HS09527GTPASE, IMAP FAMILY MEMBER-RELATED
HS09528GTPASE, IMAP FAMILY MEMBER-RELATED
HS09529PHYTANOYL-COA ALPHA-HYDROXYLASE
HS09530CELL DIVISION PROTEIN KINASE
HS09531ETS
HS09532HOST CELL FACTOR
HS09533NY-REN-58 ANTIGEN
HS09534PLEXIN
HS09535
HS09536RAS-LIKE FAMILY MEMBER 11
HS09537SYNAPSIN
HS09538METALLOPROTEASE INHIBITOR
HS09539POLY [ADP-RIBOSE] POLYMERASE
HS09540ETS
HS09541CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER
HS09542MONOCARBOXYLATE TRANSPORTER
HS09543RNA POLYMERASE II-ASSOCIATED PROTEIN 3
HS09544SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS09545MITOCHONDRIAL INNER MEMBRANE PROTEASE
HS09546RNA POLYMERASE II-ASSOCIATED PROTEIN 3
HS09547CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
HS09548MITOGEN-ACTIVATED PROTEIN KINASE
HS09549MITOGEN-ACTIVATED PROTEIN KINASE
HS09550PROTEIN MCM10 HOMOLOG
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