About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09601UNCHARACTERIZED
HS09602NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
HS09603PROTEIN OF UNKNOWN FUNCTION DUF729
HS09604STAC
HS09605GRANULYSIN RELATED
HS09606TONSOKU-LIKE PROTEIN
HS09607NEUROTRANSMITTER GATED ION CHANNEL
HS09608PEPTIDASE M20
HS09609G-PROTEIN COUPLED RECEPTOR
HS09610UNCHARACTERIZED
HS09611ORIGIN RECOGNITION COMPLEX SUBUNIT 3
HS09612ZINC FINGER PROTEIN RLF
HS09613GLYCOPROTEIN HORMONE ALPHA CHAIN
HS09614HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
HS09615SORTING NEXIN
HS09616ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS09617INTERPHOTORECEPTOR MATRIX PROTEOGLYCAN
HS09618MYOSIN
HS09619LITHOSTATHINE
HS09620
HS09621SOX TRANSCRIPTION FACTOR
HS09622THYMIDYLATE KINASE
HS09623RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2
HS09624PROTEIN CBG26694
HS09625RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
HS09626DNA-BINDING PROTEIN INHIBITOR
HS09627KINASE D-INTERACTING SUBSTRATE OF 220 KDA
HS09628PORCUPINE
HS09629ASAP FAMILY MEMBER
HS09630INTEGRIN BETA-1-BINDING PROTEIN 1
HS09631CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER
HS09632DNAJ HOMOLOG SUBFAMILY C MEMBER 30, MITOCHONDRIAL
HS09633ISOAMYL ACETATE-HYDROLYZING ESTERASE 1
HS09634
HS09635ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
HS0963614-3-3 PROTEIN
HS09637TRANSCRIPTION FACTOR CP2
HS09638KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS09639UNCHARACTERIZED
HS09640LEUCINE-RICH REPEAT-CONTAINING
HS09641TRANSMEMBRANE PROTEIN 151 HOMOLOG
HS09642RNA POLYMERASE II-ASSOCIATED PROTEIN 1
HS09643
HS09644
HS09645TYROSINE-PROTEIN KINASE RECEPTOR
HS09646INOSITOL POLYPHOSPHATE KINASE
HS09647ACYL-COA DEHYDROGENASE
HS09648BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN
HS09649NEUROPEPTIDE Y RECEPTOR
HS09650COILED-COIL DOMAIN-CONTAINING PROTEIN 32
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