About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS09651PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
HS09652MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
HS09653PROTEIN DISPATCHED-RELATED
HS09654PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
HS09655WD-40 REPEAT PROTEIN
HS09656SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
HS09657SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2
HS09658TRANSCRIPTIONAL REPRESSOR PROTEIN YY
HS09659PROTEASE S8 TRIPEPTIDYL PEPTIDASE I CLN2
HS09660MIS18-BINDING PROTEIN 1
HS09661SERINE PROTEASE FAMILY S1C HTRA-RELATED
HS09662HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
HS09663RIBOSOMAL PROTEIN S6 KINASE
HS09664AMINO ACID TRANSPORTER
HS09665TRNA METHYLTRANSFERASE
HS09666CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1
HS09667HOMEOBOX PROTEIN SIX
HS09668HOMEOBOX PROTEIN SIX
HS09669HOMEOBOX PROTEIN SIX
HS09670TRANSPOSABLE ELEMENT-RELATED
HS09671PROTEIN PHOSPHATASE
HS09672DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED
HS09673PECANEX
HS09674LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
HS09675RETICULON-LIKE PROTEIN
HS09676ATP-DEPENDENT RNA HELICASE
HS09677RENTINAL DEGENERATION 3-LIKE
HS09678KINESIN-LIKE PROTEIN KIN-12D
HS09679TRANSFORMING ACIDIC COILED-COIL CONTAINING PROTEIN 1/2
HS09680FIBROBLAST GROWTH FACTOR RECEPTOR
HS09681LATERAL SIGNALING TARGET PROTEIN 2 HOMOLOG
HS09682CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 99
HS09683INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN,N-TERMINAL
HS0968439S RIBOSOMAL PROTEIN L35, MITOCHONDRIAL
HS09685HVA22-LIKE PROTEINS
HS09686CHARGED MULTIVESICULAR BODY PROTEIN
HS09687HSC70CB, ISOFORM G-RELATED
HS09688SERINE/THREONINE-PROTEIN KINASE PLK
HS09689INOSITOL-TETRAKISPHOSPHATE 1-KINASE
HS09690E3 UBIQUITIN-PROTEIN LIGASE UBR7
HS09691BTB POZ DOMAIN CONTAINING 7
HS09692UNCHARACTERIZED
HS09693
HS09694PROTEIN FAM181B
HS09695ANKYRIN REPEAT-CONTAINING
HS09696UNCHARACTERIZED
HS09697UBIQUITIN THIOLESTERASE PROTEIN OTUB
HS09698RNA HELICASE
HS09699SERINE PROTEASE INHIBITOR, SERPIN
HS09700ATAXIN-3-RELATED
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