About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10151-
HS10152HAUS AUGMIN-LIKE COMPLEX SUBUNIT 2
HS101534F2 CELL-SURFACE ANTIGEN HEAVY CHAIN
HS10154CONTACTIN 5
HS10155PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
HS10156HIKESHI FAMILY MEMBER
HS10157HYPOTHETICAL HEAT DOMAIN-CONTAINING
HS10158NYD-SP28 PROTEIN
HS10159STRIATIN
HS10160ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY
HS10161E3 UBIQUITIN-PROTEIN LIGASE TRIP12
HS10162COLLAGEN ALPHA
HS10163VESICLE PROTEIN SORTING-ASSOCIATED
HS10164
HS10165PHD FINGER PROTEIN
HS10166PHD FINGER PROTEINS
HS10167MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
HS10168LUPUS LA PROTEIN-RELATED
HS10169HEAT SHOCK PROTEIN 90 P90 CO-CHAPERONE AHA-1
HS10170CELL DIVISION CYCLE ASSOCIATED PROTEIN 4/SERTA DOMAIN-CONTAINING PROTEIN 2
HS10171PERIAXIN/AHNAK
HS10172PROTEIN LBH-RELATED
HS10173EXOCYST COMPLEX COMPONENT SEC6-RELATED
HS10174EXOCYST COMPLEX COMPONENT SEC6-RELATED
HS10175SLIT AND NTRK-LIKE PROTEIN 4-RELATED
HS10176NARDILYSIN
HS10177PROTEIN FAM163A
HS10178RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
HS10179INTERLEUKIN-27 SUBUNIT BETA
HS10180SHIPPO-1-RELATED
HS10181CYTOKINE RECEPTOR
HS10182LD33804P
HS10183SINGLE STRANDED DNA BINDING PROTEIN
HS10184ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
HS10185OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL
HS10186EH DOMAIN
HS10187SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
HS10188SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
HS10189FORKHEAD BOX PROTEIN G1
HS10190PROTEIN KINASE C, MU
HS10191UNCHARACTERIZED
HS10192SERINE PALMITOYLTRANSFERASE SMALL SUBUNIT A
HS10193EGL NINE HOMOLOG-RELATED
HS10194HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
HS10195SI:CH211-196P9.1-RELATED
HS10196PKA ANCHORING PROTEIN
HS10197RHO GTPASE-ACTIVATING PROTEIN 190
HS10198IRON-SULFUR PROTEIN NUBPL
HS10199D-TYROSYL-TRNA TYR DEACYLASE
HS10200AGAP005574-PA
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