About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10701LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
HS10702PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
HS10703SERINE/THREONINE-PROTEIN KINASE TAO
HS10704MITOGEN-ACTIVATED PROTEIN KINASE-BINDING PROTEIN 1
HS10705
HS10706T-BOX PROTEIN-RELATED
HS10707G-PROTEIN COUPLED RECEPTOR
HS10708ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS10709BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN
HS10710BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN
HS10711
HS10712SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
HS10713TRANSCRIPTIONAL REPRESSOR PROTEIN YY
HS10714ADENOSINE/GUANOSINE DIPHOSPHATASE
HS10715SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS10716STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15
HS10717MALONATE-SEMIALDEHYDE DEHYDROGENASE
HS10718TRANSCRIPTIONAL REPRESSOR PROTEIN YY
HS10719CLOCK-INTERACTING PACEMAKER
HS10720VASCULAR ENDOTHELIAL GROWTH FACTOR
HS10721ACTIN
HS10722FULL-LENGTH CDNA CLONE CS0DC025YL05 OF NEUROBLASTOMA
HS10723N-ALPHA-ACETYLTRANSFERASE 30
HS10724HOMEOBOX PROTEIN
HS10725E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED
HS10726ADP RIBOSYLATION FACTOR-RELATED
HS10727PRE-MRNA PROCESSING PROTEIN PRP39-RELATED
HS1072840S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI
HS10729PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP3
HS10730CONTACTIN 5
HS10731DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS10732TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS10733ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS1073440S RIBOSOMAL PROTEIN S29
HS10735BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
HS10736WD REPEAT PROTEIN
HS10737HEAT SHOCK PROTEIN 90 FAMILY MEMBER
HS10738HEAT SHOCK PROTEIN 90 FAMILY MEMBER
HS10739SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B
HS10740
HS10741IODOTHYRONINE DEIODINASE
HS10742ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS10743TRANSPOSASE-RELATED
HS10744MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
HS10745MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
HS10746VERTNIN
HS10747UPF0338 PROTEIN
HS10748NOTCH LIGAND FAMILY MEMBER
HS10749CATION TRANSPORT PROTEIN CHAC-RELATED
HS10750HELICASE SRCAP-RELATED
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