About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11351RE60986P
HS11352C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
HS11353CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS11354PA-PL1 PHOSPHOLIPASE FAMILY
HS11355CELL GROWTH REGULATOR WITH RING FINGER DOMAIN PROTEIN 1
HS11356DNA POLYMERASE ZETA CATALYTIC SUBUNIT
HS11357SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
HS11358MONOCARBOXYLATE TRANSPORTER
HS11359BRIX DOMAIN CONTAINING PROTEIN
HS11360
HS11361S-ADENOSYLMETHIONINE DECARBOXYLASE
HS11362CELL DIVISION PROTEIN KINASE
HS11363TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN TAB
HS11364
HS11365N4BP1-RELATED
HS11366PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4
HS11367GLYCOPROTEIN INTEGRAL MEMBRANE PROTEIN 1
HS11368MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24
HS11369GRANULOCYTE COLONY-STIMULATING FACTOR
HS11370SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS11371-
HS11372RNA-BINDING PROTEIN LUC7-RELATED
HS11373
HS11374EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN
HS11375SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS11376
HS11377SOLUTE CARRIER FAMILY 17
HS11378SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
HS11379
HS11380SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
HS11381PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
HS11382SEC24-RELATED PROTEIN
HS11383ZINC FINGER PROTEIN
HS11384FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
HS11385
HS11386TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 12A
HS11387RING FINGER PROTEIN-RELATED
HS11388SERINE/THREONINE-PROTEIN KINASE
HS11389
HS11390COILED-COIL DOMAIN-CONTAINING PROTEIN 189
HS11391TUBBY-RELATED
HS11392CYTOKINE RECEPTOR
HS11393UBIQUITIN-CONJUGATING ENZYME E2
HS11394POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN
HS11395SERINE/THREONINE-PROTEIN KINASE
HS11396RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG
HS11397N-LINKED OLIGOSACCHARIDE PROCESSING
HS11398UNCHARACTERIZED
HS11399C130050O18RIK PROTEIN
HS11400G-PROTEIN COUPLED RECEPTOR 182 AND ESTROGEN RECEPTOR 1
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