About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11901DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11
HS11902IP01015P-RELATED
HS11903REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11904ZINC FINGER PROTEIN
HS11905WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED
HS11906ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
HS11907PDZ DOMAIN CONTAINING PROTEIN
HS11908-
HS11909
HS11910EME1 PROTEIN
HS11911CARBONIC ANHYDRASE
HS11912REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11913DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS11914ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
HS11915NUCLEOSIDE DIPHOSPHATE KINASE
HS11916POLYCOMB GROUP PROTEIN
HS11917TUDOR DOMAIN CONTAINING PROTEIN
HS11918UNCHARACTERIZED
HS11919
HS11920MYOSIN VII, XV
HS11921LETHAL 2 GIANT LARVAE PROTEIN
HS11922MEVALONATE KINASE/GALACTOKINASE
HS11923PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
HS11924ACYL-COA-BINDING PROTEIN, ACBP
HS11925PDZ DOMAIN-CONTAINING PROTEIN
HS11926PDZ DOMAIN-CONTAINING PROTEIN
HS11927
HS11928ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS11929DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS11930DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS11931G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN
HS11932KRAB DOMAIN C2H2 ZINC FINGER
HS11933FORMIN
HS119345-HYDROXYTRYPTAMINE RECEPTOR
HS11935B30.2/SPRY DOMAIN-CONTAINING PROTEIN
HS11936B30.2/SPRY DOMAIN-CONTAINING PROTEIN
HS11937METHIONINE SYNTHASE
HS11938RIBOSOME BIOGENESIS PROTEIN
HS11939UNCHARACTERIZED
HS11940KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS11941E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
HS11942NUCLEAR RECEPTOR BINDING FACTOR 2
HS11943HVA22-LIKE PROTEINS
HS11944JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN
HS11945CYTOCHROME P450 26
HS11946SEC15
HS11947HOMEOBOX PROTEIN HHEX
HS11948TRNA-PSEUDOURIDINE SYNTHASE
HS11949NY-REN-58 ANTIGEN
HS11950RHO FAMILY GTPASE
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