About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12001MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
HS12002ABL INTERACTOR FAMILY MEMBER
HS12003ANGIOTENSIN-CONVERTING ENZYME
HS12004INTEGRIN ALPHA
HS12005HOMEOBOX PROTEIN
HS12006HOMEOBOX PROTEIN
HS12007HISTONE ACETYLTRANSFERASE
HS12008TELOMERASE-BINDING PROTEIN P23 P90 CO-CHAPERONE
HS12009ALANYL-TRNA EDITING PROTEIN
HS12010FER-1-LIKE
HS12011WD40 REPEAT DOMAIN 95
HS12012DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
HS12013CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
HS12014WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED
HS12015ARYLSULFATASE FAMILY MEMBER
HS12016MONOCARBOXYLATE TRANSPORTER
HS12017REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12018PROTEIN FAM104A
HS12019UNCHARACTERIZED
HS12020NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 8
HS12021AMINO ACID TRANSPORTER
HS12022PHD FINGER TRANSCRIPTION FACTOR
HS12023PHD FINGER TRANSCRIPTION FACTOR
HS12024PHD FINGER TRANSCRIPTION FACTOR
HS12025TRANSPOSABLE ELEMENT-RELATED
HS12026FASCIN
HS12027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12028FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100
HS12029DETERIN
HS12030TRANSMEMBRANE PROTEIN 114/235 FAMILY MEMBER
HS12031MODULATOR OF SMOOTHENED PROTEIN
HS12032METALLOPROTEASE
HS12033RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
HS12034KETIMINE REDUCTASE MU-CRYSTALLIN
HS12035RHO FAMILY GTPASE
HS12036GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS12037DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
HS12038UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
HS12039EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
HS12040ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1
HS12041RADIAL SPOKE HEAD 10 HOMOLOG B-RELATED
HS12042DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN
HS12043UNCHARACTERIZED
HS12044PARVALBUMIN ALPHA
HS12045PARVALBUMIN ALPHA
HS12046PARVALBUMIN ALPHA
HS12047
HS12048BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
HS12049DYSFERLIN-RELATED
HS12050BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2
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