About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12151ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN
HS12152SOX100B
HS12153LIPASE MATURATION FACTOR
HS12154-
HS12155PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE
HS12156MIP08469P
HS121575'(3')-DEOXYRIBONUCLEOTIDASE
HS1215826S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3
HS12159NEUROPEPTIDES RECEPTOR
HS12160NEUROPEPTIDES RECEPTOR
HS12161ZINC/IRON TRANSPORTER
HS12162ANKYRIN REPEAT FAMILY PROTEIN
HS12163POLYCYSTIN-1
HS12164ATP-BINDING CASSETTE SUB-FAMILY B
HS12165MONOCARBOXYLATE TRANSPORTER
HS12166
HS12167POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN
HS12168GAMMA TUBULIN COMPLEX PROTEIN
HS12169DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
HS12170
HS12171INWARD RECTIFIER POTASSIUM CHANNEL
HS12172INWARD RECTIFIER POTASSIUM CHANNEL
HS12173EXOCYST COMPLEX PROTEIN EXO70
HS12174UNCHARACTERIZED
HS12175B-BOX DOMAIN CONTAINING
HS12176FATTY ACID DESATURASE 2
HS12177ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
HS12178BRYOPORIN
HS12179PROTON CHANNEL OTOP
HS12180PROTEIN HID1
HS12181TRYPSIN-RELATED
HS12182BRYOPORIN
HS12183ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
HS12184EG:EG0003.4 PROTEIN-RELATED
HS12185RECEPTOR ACTIVITY MODIFYING PROTEIN RAMP
HS12186CELL ADHESION MOLECULE
HS12187-
HS12188FORMIN-LIKE PROTEIN
HS12189P140CAP/SNIP-RELATED
HS12190REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12191
HS12192
HS12193ADP RIBOSYLATION FACTOR-RELATED
HS12194MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
HS12195GRANULIN
HS12196
HS12197SUSHI DOMAIN-CONTAINING PROTEIN
HS12198PDF RECEPTOR-LIKE PROTEIN-RELATED
HS12199TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS12200NON-SPECIFIC LETHAL 1, ISOFORM M
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