About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12751DNAJ HOMOLOG SUBFAMILY C MEMBER 25
HS12752
HS12753EGF-LIKE-DOMAIN, MULTIPLE 7, 8
HS12754PROTEIN SIDEKICK
HS12755LYSOZYME C
HS12756METHYL-CPG BINDING PROTEIN, MBD
HS12757LUNG ADENOMA SUSCEPTIBILITY PROTEIN 2
HS12758WD40 REPEAT PF20
HS12759GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS12760FIBRINOGEN/TENASCIN/ANGIOPOEITIN
HS12761F-BOX/WD REPEAT-CONTAINING PROTEIN 2
HS12762CRUMBS FAMILY MEMBER
HS12763DENN DOMAIN-CONTAINING
HS12764METALLOPROTEASE TLDD
HS12765NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A
HS12766LIM/HOMEOBOX PROTEIN LHX
HS12767MULTIVESICULAR BODY SUBUNIT 12B
HS12768E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS12769LD11652P
HS12770-
HS12771NITRIC OXIDE SYNTHASE-RELATED
HS12772AD-003 - RELATED
HS12773CARNITINE O-ACYLTRANSFERASE
HS12774IMMEDIATE EARLY RESPONSE GENE
HS12775
HS12776SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B
HS12777HISTONE H3.2
HS12778HISTONE H3.2
HS12779M7GPPPN-MRNA HYDROLASE
HS12780ATP-DEPENDENT RNA HELICASE
HS127813-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE
HS12782TALIN
HS12783TROPOMYOSIN
HS12784CYTOKINE RECEPTOR
HS12785PUR-TRANSCRIPTIONAL ACTIVATOR
HS12786AMINO ACID TRANSPORTER
HS12787
HS12788HEREGULIN-NEUREGULIN FAMILY MEMBER
HS12789
HS12790GLYCOPROTEIN HORMONE RECEPTOR
HS12791HVA22-LIKE PROTEINS
HS12792
HS12793CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
HS12794TYROSINE-PROTEIN KINASE
HS12795ENOYL-COA HYDRATASE-RELATED
HS12796NUCLEAR FACTOR INTERLEUKIN-3-REGULATED PROTEIN
HS12797
HS12798TYROSINE-PROTEIN KINASE RECEPTOR
HS12799CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE
HS12800CHONDROITIN SYNTHASE
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