About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12801SCAVENGER RECEPTOR CLASS F
HS12802LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
HS12803UNCHARACTERIZED
HS12804DYNEIN REGULATORY COMPLEX SUBUNIT 7
HS12805CENTROSOMAL PROTEIN 2
HS12806
HS12807LAMIN DM0-RELATED
HS12808REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12809SI:CH211-196P9.1-RELATED
HS12810LAMIN DM0-RELATED
HS12811ZINC FINGER PROTEIN DZIP1
HS12812E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
HS12813LAMIN DM0-RELATED
HS12814LAMIN DM0-RELATED
HS12815LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
HS12816SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
HS12817MAJOR INTRINSICALLY DISORDERED NOTCH2-BINDING RECEPTOR 1 MINAR1 FAMILY MEMBER
HS12818UNCHARACTERIZED
HS12819TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1
HS12820OSTEOPONTIN
HS12821
HS12822PROSTATE ANDROGEN-REGULATED MUCIN-LIKE PROTEIN 1
HS12823
HS12824ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS12825R-SEVEN BINDING PROTEIN (R7BP) HOMOLOG
HS12826COMPLEMENT COMPONENT C6
HS12827COMPLEMENT COMPONENT C6
HS12828CYTOKINE RECEPTOR
HS12829ZINC FINGER PROTEIN
HS12830EPHRIN
HS12831GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45
HS12832GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45
HS12833MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS12834COILED-COIL DOMAIN-CONTAINING PROTEIN 152
HS12835SYNTENIN RELATED
HS12836TIGHT JUNCTION PROTEIN
HS12837REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12838THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
HS12839SYNAPTOTAGMIN 14, ISOFORM D
HS12840SERTA DOMAIN-CONTAINING PROTEIN 4
HS12841GLYCINE N-METHYLTRANSFERASE
HS12842CHONDROLECTIN VARIANT CHODLFDELTAE.
HS12843CHONDROLECTIN VARIANT CHODLFDELTAE.
HS12844CALPAIN
HS12845CALPAIN
HS12846APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
HS12847-
HS12848ANNEXIN
HS12849TRANSMEMBRANE CHANNEL-RELATED
HS12850AN1-TYPE ZINC FINGER PROTEIN
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