About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12651SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE
HS12652CYTOCHROME P450 FAMILY 4
HS12653INSULIN RECEPTOR SUBSTRATE
HS12654MERLIN/MOESIN/EZRIN/RADIXIN
HS12655DEOXYCYTIDYLATE DEAMINASE-RELATED
HS12656DEOXYCYTIDYLATE DEAMINASE-RELATED
HS12657CALCIUM-BINDING PROTEIN 39-RELATED
HS12658RHO GUANINE EXCHANGE FACTOR-RELATED
HS12659TROPONIN C-AKIN-1 PROTEIN
HS12660
HS12661CHIMERIN FAMILY MEMBER
HS12662SI:CH211-243P7.3-RELATED
HS12663SI:DKEY-19B23.11-RELATED
HS12664REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12665POL PROTEIN
HS12666
HS12667P53-INDUCED PROTEIN RELATED
HS12668E3 UBIQUITIN-PROTEIN LIGASE KCMF1
HS12669HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
HS12670TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED
HS12671NXPE FAMILY MEMBER
HS12672CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED
HS126732-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2
HS12674NEUROLIGIN
HS12675REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12676CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
HS12677REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12678CD99/MIC2 PROTEIN RELATED
HS12679DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
HS12680RETINOL DEHYDROGENASE
HS12681UNCHARACTERIZED
HS12682CENTROSOMAL PROTEIN OF 70 KDA
HS12683SI:CH211-196P9.1-RELATED
HS12684EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
HS12685
HS12686PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
HS12687PROTEIN ARGININE N-METHYLTRANSFERASE
HS12688CALCIPRESSIN
HS12689REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12690RUNT RELATED
HS12691DOWNSTREAM NEIGHBOR OF SON
HS12692RHO GTPASE-ACTIVATING PROTEIN 68F
HS12693FOLATE TRANSPORTER
HS12694UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3
HS12695
HS12696DDRGK DOMAIN-CONTAINING PROTEIN 1
HS12697CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
HS12698SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT
HS12699ATP-DEPENDENT RNA HELICASE DBP3
HS12700UBIQUITIN-PROTEIN LIGASE E3C
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