About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13001
HS13002METALLOPROTEASE TIKI
HS13003REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS13004HOOK PROTEINS
HS13005UNCHARACTERIZED
HS13006XPA-BINDING PROTEIN 1-RELATED
HS13007ARP2/3 COMPLEX 21 KD SUBUNIT
HS13008UBIQUITIN-CONJUGATING ENZYME E2
HS13009UNCHARACTERIZED
HS13010UNCHARACTERIZED
HS13011RIM BINDING PROTEIN-RELATED
HS13012NUCLEOLAR COMPLEX PROTEIN 4
HS13013PSEUDOURIDYLATE SYNTHASE
HS13014CALCIUM-TRANSPORTING ATPASE
HS13015BREAKPOINT CLUSTER REGION PROTEIN BCR
HS13016OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
HS13017SMALL NUCLEAR RIBONUCLEOPROTEIN SM
HS13018DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
HS13019
HS13020NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR
HS13021REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS13022NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR
HS13023NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER
HS13024CHLORIDE INTRACELLULAR CHANNEL PROTEIN 6-RELATED
HS13025ALPHA- 1,3 -FUCOSYLTRANSFERASE
HS13026POU DOMAIN
HS13027NEURAL PROLIFERATION DIFFERENTIATION AND CONTROL PROTEIN-1 NPDC-1 PROTEIN
HS13028ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
HS13029ANNEXIN
HS13030RNA 3' TERMINAL PHOSPHATE CYCLASE
HS13031NUCLEOTIDE KINASE
HS13032CDC37-RELATED
HS13033COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77
HS13034PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
HS130353'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN
HS13036PROTEIN AMBP
HS13037LIPOCALIN
HS13038LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
HS13039DNA REPAIR PROTEIN SWI5 HOMOLOG
HS13040PROTEIN FAM163B MEMBER
HS13041DOPAMINE BETA HYDROXYLASE RELATED
HS13042SARCOSINE DEHYDROGENASE-RELATED
HS13043PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
HS13044RURM1 PROTEIN
HS13045BREAST CANCER ANTI-ESTROGEN RESISTANCE PROTEIN 3 HOMOLOG-LIKE PROTEIN
HS13046
HS13047TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
HS13048
HS13049
HS13050ZINC FINGER RNA-BINDING PROTEIN
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