About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13151CILIARY NEUROTROPHIC FACTOR
HS13152REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS13153CALCIUM-BINDING PROTEIN 8-RELATED
HS13154NUCLEASE-RELATED
HS13155UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT X
HS13156GALACTOSE-3-O-SULFOTRANSFERASE
HS13157PROLINE OXIDASE
HS13158RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
HS13159TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
HS13160G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP
HS13161GLYCOLIPID TRANSFER PROTEIN-RELATED
HS13162UNCHARACTERIZED
HS13163JBTS17
HS13164GASTRULATION DEFECTIVE PROTEIN 1-RELATED
HS13165GDNF SUBFAMILY OF TGF-BETA FAMILY
HS13166PDZ AND LIM DOMAIN PROTEIN ZASP
HS13167TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
HS13168NETRIN RECEPTOR UNC5
HS13169TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
HS13170RFX TRANSCRIPTION FACTOR FAMILY
HS13171SMAD
HS13172TGF-BETA FAMILY
HS13173PLAKOPHILLIN-RELATED
HS13174ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2
HS13175G-PROTEIN COUPLED RECEPTOR
HS13176NUCLEAR PORE COMPLEX PROTEIN NUP155
HS13177NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED
HS13178MELANOMA ANTIGEN RECOGNIZED BY T-CELLS 1
HS13179E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED
HS13180
HS13181ORNITHINE DECARBOXYLASE ANTIZYME
HS13182METALLOPEPTIDASE M28 FAMILY MEMBER
HS13183RAB6A-GEF COMPLEX PARTNER PROTEIN 1
HS13184PNAS-3 RELATED
HS13185TYROSINE-PROTEIN KINASE
HS13186DRAB11-RELATED
HS13187ATP-DEPENDENT RNA HELICASE RHLE-RELATED
HS13188T-BOX PROTEIN-RELATED
HS13189T-BOX PROTEIN-RELATED
HS13190MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13
HS13191VESICULAR MANNOSE-BINDING LECTIN
HS13192MITOCHONDRIAL FISSION PROCESS PROTEIN 1
HS13193VESICULAR, OVEREXPRESSED IN CANCER, PROSURVIVAL PROTEIN 1
HS13194ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED
HS13195PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
HS13196GUANYL-NUCLEOTIDE EXCHANGE FACTOR
HS13197ZINC FINGER PROTEIN
HS13198G-PROTEIN COUPLED RECEPTOR
HS13199E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS13200ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 19
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